Gene detail

Detailed information of agem_s0033.g58.t2 in Acropora gemmifera

Genomic Location: sc0000033_pilon:717322...734984
NR annotation: XP_029190699.2, protein transport protein Sec31A-like isoform X1 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0033.g58.t2

ATAGTTGCTTGGAAAATTCGTCAACTGCTGACCAAAAAATAGGTATCCAGAAGAGGCTCGCCAAATATTTGCCACGTTGCTGTGCGTGAAGTTGAATTTGACACGTAAAATTATCCAAGGATTCTGATCTGAAGTAACCACTTTTTCTTACAGTGACATTTTTCCACATCTCTTCATCACCGTTGGTTGTATGACACTCTTTTTGGTGGTAAAGGAAGCGTAAAGAAAAGACATCATGAAGGTCAAGGAAGTGAACAGAACAGCAAACATTGCATGGAGTCCGGCACCCCAGTACCCAATATACCTTGCTGCTGGTACTGCTGCCCAACAGCTGGATGCCACCTTTAGCACAAATGCTGCTCTTGAGATTTTTACTCTTAACCTGTCAAGCGGTGACACAGTGATGCCACTTTCAGGAACAGTGGCTTCAGAGCACAGGTTTCATAAACTTGTCTGGGGTTCCCATGGAATTGATTCTTCTACTTCATCGTCTGGACTTCTGATTGGGGGAAGTGATAATGGCCTCATCAGCATCTATAATGCACAGAAGATTATATCAGGAGATACTGACGACTGTGTTGTGTTCGAGGCCTCTAAACACACAGGTCCTGTTCAAGCTCTTGACATCAACCCATTCAAAACAAGCTTACTAGCGTCAGGTGCAAGTGATTCAGAGATTTTCATCTGGGATCTGACAAATCCCAGCAGTCCTCTTACACCAGGAAGTAAAACATTGCCACCAGATAACATCAGTTGTGTGGCATGGAACAGACAGGTTCAGCATATACTGGCCTCAGCCTCTCCTTGTGGCCGCTGTGTTGTGTGGGACTTGAGAAAGAATGAGCCTATTATTAAAGTCAGCGATCAGAGTGCTATGATTCGATGCAAGGCTGTAGAATGGCATCCAGATGTTGCAACCCAAATGGTTTTAGCATCAGAAGATGATAGATATCCAGTTATACAGATGTGGGATCTTAGATTTGCCACATCCCCAATGAAAGTTCTGGAAGGTCATCAGAGAGGAATCCTGTCAATTGCCTGGTGCCCTCAGGATCCTGACCTGCTCATGAGCTGTGCCAAGGATAATCGCATTCTCTGTTGGAATCCAAACACCCAAGAtgctggaggagagATAACCTATGAGCTGCCAACTACATCGCAGTGGAGTTTTGATGTTGCATGGTGTCCAAGAAACCCTGCAATGATTTGTTCGTCATCCTTTGATGGCCATGTCAGTGTTTTTTCACTTATGGGTGGTGGGGCTTCTAGCCAAGATTTCAATCAACAAAAGGTCATGAGTGCATTTGATGCAGATGACCCGTTCAGCACTCAAATTCGACAGGCacaacagcaacaacagcaacaacagaattctgcaccaacaagcagcCCCTTGAAGAAACCACCCAAGTGGCTGCGGAGACCTTGCGGTGCTTCATTTTCTTTTGGTGGCAAACTGATATCTTTTGGGCAGACAAAAGACTCACCAATTGCCCAGGTGAACATCAGCCAAGTGACCACAGAGCAGGAACTGGTCAACAGATCATATGAATTGGAAGGAGCTTTAGCTTCAGGAAGTTTCATACAGTATTGTAACTCCAAAGTGGAGAACTCTACACAAGAGTTAGAAAGAACTCTTTGGAGTTTCCTGAAGATAAACTTTGAGAGAGAACCTAGAAGACATTTCCTAACTCTTCTTGGCTATGATCCTATGGAATTATCAAAGAAGGTTGCATCATCTTACTCTTCATCAAGCTCAAGCAGAAATGAAGGTGGAGTTGACGCTGAAGAGTTGGTTCAAAAAATGCAACTTCTTTCCGCAGGGGAAGCTACCAATAAATTGGGTCAGAGTGTCTTTTCAAGTGGAGCAAGCACACCCTCAGTAACTGGATCTAAGACTCCCTTATCAGAAGCTGGTAGTCTTAGTGAAGGAGCCGCAGCTTTTGATGTCATTGCTGCTGGGGGACCTCTGTCAGTGGATACAGGAGACTTAGGTGTTGGCGAGCCTGTCAAGCAACCCTCTCCATTCCACATACCTACAGATGACGATACTGATGGTCTCATCTCGCAAGCGTTGCTAACTGGAAATTTTGAAGCGGCTGTTGATGTTTGTCTGTATGCTGATAGAATGGCTGATGCTTTCCTGCTTGCAATTGCCGGTGGCCCAGATCTTTTGGCCAGGATACAGACGCGATATTTTGAGAAGAGCAAGAGCCATGTCGCAAGGCTGATGTCAGTGGTTGTGAATCGGGACTGGCGTGATATAGTTGAAAGCTGTGTACTTGAGAATTGGAGAGAAGCTCTTGCAGCACTTGTGACATATGCCAAGGCCGAAGAGTTCACTGCACTCTGTGATCTGTTGGGTCAGCGTCTTGAGCAGGAAGGAGATGAACACTGTGCTAATTCCATGGTTTGCTACATTTGTGCTGGAAATGTGGAAAAGTTTGTTTCATGTTGGTGAGTGAGGCCGCTTCTGTCACTCGTTCCTTGATTTTCTCCAGTCTCATGTGCCTGTATGACAGTTTTTGAATCCCAGTGAGAGTCAATAAcatacatgtccaata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SYD5	Protein transport protein Sec31A OS=Danio rerio OX=7955 GN=sec31a PE=2 SV=1
Q5R4F4	Protein transport protein Sec31A OS=Pongo abelii OX=9601 GN=SEC31A PE=2 SV=1
O94979	Protein transport protein Sec31A OS=Homo sapiens OX=9606 GN=SEC31A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003500 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR040251 all species →	Family	Protein transport protein SEC31-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13923 all species →	SEC31-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007029 all species →	Biological Process	endoplasmic reticulum organization	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0033.g58.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.