Gene detail

Detailed information of agem_s0034.g49.t2 in Acropora gemmifera

Genomic Location: sc0000034_pilon:1164492...1186766
NR annotation: XP_044183527.1, ras GTPase-activating-like protein IQGAP1 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0034.g49.t2

ATGCAAGATCCACCGTGCAAGACTGTTAGGAAATTCCTCCATCTCTTGGAACACAGTGATGCTGACTTTGAAGAAGAACTGGACCTTCAGAAATTGAGGGCGCAAGTTGTGACTGAAATCAGATCCAATCAACAGCTGGAGAGTGACTTAAATCTTATGGACATAAAAATTGGCCTCCTTGTTCGAAACAGGATCACATTACAGGATGTTGTTATTCATGGAAAGAATCTCAAGCGTGAAAAGCAAGATGTCGGGATGGCTTTGCAGAGAACTAAGGGAATCAAATCACTGAGTAAAGAGAGTCATGAAAAATTAGAAGGATATCAAAACCTTTTTTACTTGCTTCAGACAAATCCAGTGTACCTTGCAAAACTCATTTTTGCGATGCCGCAGAGTAAATTCACCAAGTTTATGGAATCTGTGATATTGACATTGTACAATTATGCTTCGAATCCTCGTGAGGAGTATCTACTGGTGAAATTATTTGACACTGCTCTCAAGGAAGAAATTCTTTCAAAGGTTGATCAGATGCAGGACATTGTCACAGGGAACCCAGCTGTTATTAGAATGGTGGTTCACTTTAACAGAGGTCAAAAAGGTCAAAGTTCACTGCGAGAGCTTTTGCAGCCTCTGGTGGAAGGTGTGCTTCATGACAAGAACCTATCAATCAACACCAACCCCATTGAAGTTTACAAAGCGTGGATTAATCAGATGGAATCTGAAACAGGACAGGCAAGCAAGTTACCATATGATGTGGAGCCAGAACAGGCACTCAAACATCCCGAAGTTAACACCAGGATAGAAGCGGCCATGAAAAGTCTTACTATAGCCACGGAGACTTTCTTAAAATCAATTGTGCAGTCAGGAGACAAACTACCGTATGGCCTGAGATGTGTTGCCATGTCACTGAGAGTAGCCCTGTCTGAAAAATTCCCCGAAGCTCCAGAGTCAGAAATATTAAAGGTTGTGGGAAACTTGATCTACTATCGCTACATGAACCCAGCGATTGTTGCTCCTGATGCGTTTGATATTGTAGCATTTGGCGTTGACAAAGGGTTGACATCAGATCAGAGAAGAAACCTTGGGTCCATTGCCAAGATTTTACAATATGCGGCATCAAATAAAATGTTTGGAGGTGAAAGTTCCCATCTCAGTCCACTCAATGCCTACATCGCAGAGGCTCATCAACGATTCAAGCGATTCTTCTTGGAAGTGTCAACAGTGGAGGAACCTGAAAATCATTTCAATATCGATGAATATACAGATGTGGTTATGGTCACCAAACCTGCCATCTACATCTCAGTGCAGGAGATTTGTGACACTCACACGCTACTGTTAGATCACAAGGATGAAATAGCTCCTGACCCTAACGATCCTTTGCATGAGTTGCTTGATGATTTGGGCGATGCACCGAGTGTTGAAGCTCTGCTAGGAGAATCACCGCGGAAGCCAAACGTGTTATATTTGACAAAAAGAGTGATCGTTGATGTGCTGAAAGTGCAACCAGGCGAAAACCTTACCGAAATCCTGGAAACTGCTGCTTCAGATGAACAAGAAGAGGAACACATGAGACTAATGAAGCTCAGGGAACTGAGCGATGAAAATAAGAACAAATCGCATGGCAATGTATCAAGATCTGCGTCTTCGTACGGTGACAGCAAGCTTTCTTTGGAGGGATTGAAGAGAAAGATCATTCGAAATTTGCGCATGCTTGAAAGCCAAGGAGTGGTTACCATAAAGAATGACTACCAGGATATTATTAACGCTATTGCAAAGGACATTCGAAATCAAAGGCGCTATCGTCAAAGACGAAGACAAGAAAAAAAGAAACTGGGGCAGACATTGGAAAGCTTGCAGACAAAATCACAATTCTACGAAGAACAGATTGACTATTACAATCAATACATCCGTGTTTGCTTGGATAATCTTGCTAAGAAAGGAAAAAAACCTTCGGGTGCCAAGCAACAGAAGGGAAAGGAAGAGGTTTACCGCGGAGACATTAAATACACTGCACAGAGACTGTATGAGAAAGGAGTTATACTGGAAATTGAAGGACTGCCGCCATCACAGTTTAAAAACGTTATGTTTGAGATCAAATCAGCCGATGAAGTTGGAATGTTTGAGGTGTCTGCTAAGTTTATGGGGGTTGCCATGGAGAAAGTGGAACTCGTTTTTCAGGATTTACTCCAACTTCAATACGAAGGTGTGGCAGTCATGAAGATGTTCGGTCGCGCCAAGATCAACGTCAACCTGCTCATATTCTTGTTAAACAAGAAGTTTTACGGAAAATAG

Transcript

agem_s0034.g49.t2

ATTTGCAAGGGGATTTGTGCAGAGACTGAAATTCCAAAGGAGGCTTTCTGAACTCAGAAATCACCCAGATGAAGTTATCAAAATTCAGTCCTGGGTACGAATGTGGATTGCTAGGAAAAAATACCTTGAGAGAAGAAAATATTTTAAAGACCATGATGATGCAATTGTAAAGATCCAAGCATGGGCAAGAGCTAATGTTGCGCAAAATGATTACAGAAAACTCAGATGATGCAATTGTAAAGATTCAAGCATGGGCAAGAGCCAATGTTGCGCAAAATGATTACAGAAAACTCATTTCCATGCAAGATCCACCGTGCAAGACTGTTAGGAAATTCCTCCATCTCTTGGAACACAGTGATGCTGACTTTGAAGAAGAACTGGACCTTCAGAAATTGAGGGCGCAAGTTGTGACTGAAATCAGATCCAATCAACAGCTGGAGAGTGACTTAAATCTTATGGACATAAAAATTGGCCTCCTTGTTCGAAACAGGATCACATTACAGGATGTTGTTATTCATGGAAAGAATCTCAAGCGTGAAAAGCAAGATGTCGGGATGGCTTTGCAGAGAACTAAGGGAATCAAATCACTGAGTAAAGAGAGTCATGAAAAATTAGAAGGATATCAAAACCTTTTTTACTTGCTTCAGACAAATCCAGTGTACCTTGCAAAACTCATTTTTGCGATGCCGCAGAGTAAATTCACCAAGTTTATGGAATCTGTGATATTGACATTGTACAATTATGCTTCGAATCCTCGTGAGGAGTATCTACTGGTGAAATTATTTGACACTGCTCTCAAGGAAGAAATTCTTTCAAAGGTTGATCAGATGCAGGACATTGTCACAGGGAACCCAGCTGTTATTAGAATGGTGGTTCACTTTAACAGAGGTCAAAAAGGTCAAAGTTCACTGCGAGAGCTTTTGCAGCCTCTGGTGGAAGGTGTGCTTCATGACAAGAACCTATCAATCAACACCAACCCCATTGAAGTTTACAAAGCGTGGATTAATCAGATGGAATCTGAAACAGGACAGGCAAGCAAGTTACCATATGATGTGGAGCCAGAACAGGCACTCAAACATCCCGAAGTTAACACCAGGATAGAAGCGGCCATGAAAAGTCTTACTATAGCCACGGAGACTTTCTTAAAATCAATTGTGCAGTCAGGAGACAAACTACCGTATGGCCTGAGATGTGTTGCCATGTCACTGAGAGTAGCCCTGTCTGAAAAATTCCCCGAAGCTCCAGAGTCAGAAATATTAAAGGTTGTGGGAAACTTGATCTACTATCGCTACATGAACCCAGCGATTGTTGCTCCTGATGCGTTTGATATTGTAGCATTTGGCGTTGACAAAGGGTTGACATCAGATCAGAGAAGAAACCTTGGGTCCATTGCCAAGATTTTACAATATGCGGCATCAAATAAAATGTTTGGAGGTGAAAGTTCCCATCTCAGTCCACTCAATGCCTACATCGCAGAGGCTCATCAACGATTCAAGCGATTCTTCTTGGAAGTGTCAACAGTGGAGGAACCTGAAAATCATTTCAATATCGATGAATATACAGATGTGGTTATGGTCACCAAACCTGCCATCTACATCTCAGTGCAGGAGATTTGTGACACTCACACGCTACTGTTAGATCACAAGGATGAAATAGCTCCTGACCCTAACGATCCTTTGCATGAGTTGCTTGATGATTTGGGCGATGCACCGAGTGTTGAAGCTCTGCTAGGAGAATCACCGCGGAAGCCAAACGTGTTATATTTGACAAAAAGAGTGATCGTTGATGTGCTGAAAGTGCAACCAGGCGAAAACCTTACCGAAATCCTGGAAACTGCTGCTTCAGATGAACAAGAAGAGGAACACATGAGACTAATGAAGCTCAGGGAACTGAGCGATGAAAATAAGAACAAATCGCATGGCAATGTATCAAGATCTGCGTCTTCGTACGGTGACAGCAAGCTTTCTTTGGAGGGATTGAAGAGAAAGATCATTCGAAATTTGCGCATGCTTGAAAGCCAAGGAGTGGTTACCATAAAGAATGACTACCAGGATATTATTAACGCTATTGCAAAGGACATTCGAAATCAAAGGCGCTATCGTCAAAGACGAAGACAAGAAAAAAAGAAACTGGGGCAGACATTGGAAAGCTTGCAGACAAAATCACAATTCTACGAAGAACAGATTGACTATTACAATCAATACATCCGTGTTTGCTTGGATAATCTTGCTAAGAAAGGAAAAAAACCTTCGGGTGCCAAGCAACAGAAGGGAAAGGAAGAGGTTTACCGCGGAGACATTAAATACACTGCACAGAGACTGTATGAGAAAGGAGTTATACTGGAAATTGAAGGACTGCCGCCATCACAGTTTAAAAACGTTATGTTTGAGATCAAATCAGCCGATGAAGTTGGAATGTTTGAGGTGTCTGCTAAGTTTATGGGGGTTGCCATGGAGAAAGTGGAACTCGTTTTTCAGGATTTACTCCAACTTCAATACGAAGGTGTGGCAGTCATGAAGATGTTCGGTCGCGCCAAGATCAACGTCAACCTGCTCATATTCTTGTTAAACAAGAAGTTTTACGGAAAATAGGATAGCCATTTCTTTGCCGAATGATCATCTTTGCTGTATTAAATGCACTTAATGTAGCGAACACGACGAGACGCAGCTCAGATATTTATCACTGCTTCTATAGCGATTACCCTCTTTTGAACAACTGCCAACAGCCTGCCGGCGCAGCTTGCTCTGGGGTTGCAACGCGCACAGATTATATTTTGCAGTTAATCACTGTAAAGCAGACACACGAAATGATTATTTTGAATTGAATTACAAACTGAATTACAAACTTAATTACCTGTGGGAATGAAAAATACTCCAACAGGGTGTCACAACGGAGCGAAGGTAGCTGGAAATATAAAACCGTCTGCTTTGAAAAACTGATTTCTTAATCTTAGTTTTCATTCCGAATTCACTATTAAGTCCATTGTTCATGGGAATAAGCCTGTAAGTCTTCCCTCCATCGCTGAACATTGTCAGAATTGCTCTAGATAAATGGAAATATATCGGCAGTGATTGCCAGGTAATGTATCTTTTAAGTTAAGTTTAAATTCCTAAGCAAGGGTAAAGTGTTAAATACAAGTATTGCATTTTCAAAGTATGAAGCCTACTTGTGAAATGTTGGATAATTATTTTGCCTGTGTGTTTAAGCGATACACTCAAAGAACTATGGACCTAAAAAAGGCCTCTTCTGATGATGCTTGTGTGATCTTTCTCGGCAGCCAGTGTTGTTATTATTCTCCCAGTTTTCGACATGAAATGTTGGGCTGCTTTTTGTCCAGTGTGCCTACAACATGTATGATATTTCACCCGACGCCATGTAATTGGTCTCTGCGCTAACTGGTTACCCATTTGGAAAATAGCTGTAGGCATCCAAAAGAGTGTGATAAAACAATAAAAACCACTTTGAGTGTCGCTTCAAATTTTCCATCATCGAATCTGCTGTTTTAATTTGCGATATCAGTTTTACGAGAAATAGGGGAATCCTCAGATCTAACATAAATTGGTTGTGACATGGTACTTGCATCGCAAGTTAATTGAAAGCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46940	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens OX=9606 GN=IQGAP1 PE=1 SV=1
Q9JKF1	Ras GTPase-activating-like protein IQGAP1 OS=Mus musculus OX=10090 GN=Iqgap1 PE=1 SV=2
Q13576	Ras GTPase-activating-like protein IQGAP2 OS=Homo sapiens OX=9606 GN=IQGAP2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002348 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03836 all species →	RasGAP_C	RasGAP C-terminus	Family	Interproscan
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000593 all species →	Domain	RasGAP protein, C-terminal	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR023152 all species →	Conserved_site	Ras GTPase-activating protein, conserved site	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:1903479 all species →	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0034.g49.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.