Genomic Location: sc0000035_pilon:462666...477153
NR annotation: XP_029214366.2, nucleosome-remodeling factor subunit BPTF-like isoform X1 [Acropora millepora]
| CDS | |||||
| agem_s0035.g29.t1 | |||||
| Transcript |
| agem_s0035.g29.t1 |
| Protein |
| agem_s0035.g29.t1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q12830 | Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3 | ||||
| Q9W0T1 | Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2 | ||||
| Q6BER5 | Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans OX=6239 GN=nurf-1 PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02791 | DDT | DDT domain | Family | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF00439 | Bromodomain | Bromodomain | Domain | Interproscan |
| PF15613 | WSD | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR018501 | Domain | DDT domain | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR038028 | Family | Nucleosome-remodeling factor subunit BPTF | Interproscan |
| IPR001487 | Domain | Bromodomain | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR028941 | Domain | WHIM2 domain | Interproscan |
| IPR036427 | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45975 | NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000978 | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016589 | Cellular Component | NURF complex | Interproscan |
| GO:0035064 | Molecular Function | methylated histone binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11728 | BPTF, E(bx); nucleosome-remodeling factor subunit BPTF | - | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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