Gene detail

Detailed information of agem_s0039.g129.t1 in Acropora gemmifera

Genomic Location: sc0000039_pilon:1891191...1901722
NR annotation: XP_044164578.1, glutaryl-CoA dehydrogenase, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0039.g129.t1

NAATCGTCAAATTTTGCCTTCTTTGCTTCATTTTCATCCAACGCAAGGTCGATAACATCGGGTTTAAACTGCCTTTTCTCGCCAAATTTCGAGGTACCTTCCGAGTCTTCAGTTGCAGATGAACTATCGCCGACTTTTTTCTCATTTTCCGTCTTTCTGTTGATAACTGGGGCCGGATTTTCCTCGAAAACAGCAAAGAGGTCTTCGCCGAAACTGTCAGCCATCTTCACATGTAACTTGGGATGAGAGAGTGCTTGGCATGAGAGTGCTTTATGTACGCGACGTTTTCTACACTGCTACAAAAAGGGTCGCTTACTTAACTGTTCTTGCTGAAATATTGGAAACTGCTGACTAAAATTTTGTCATAAACACTATTGAATGAAAATCTCCGAAGTCATTTGAAATTTGCGTTATGGCTTATCTACGAGTTTTAAGACGTTTCCTAACACCAGGAAACAATGCTCTGCTTCTTTGCCGTGCACAGAGTACAGGAAATGCGGCAATCGCTCAAAAATCGAAAGAGAAAAGGGATAAATTTGTGAAGTTCAATTGGCAGGATCCATTGAGTTTGGAAAGTTGTTTGACCGGTGAAGAAATCATGGTGAGAGATCAGTTCCGAGATTACTGCCAGGAAAAACTGATGCCAAGAATATTGATGGCAAACAGGATAGAAGATTTTGATAAAAGCATAATGACTGAAATGGGTTCACTTGGAATCCTCGGTTGCACAATTCAAGGTTATGGATGTGCAGGAGTTTCATCAGTGGCTTATGGACTGATTGCCAGAGAAGTTGAAAGGGTGGACAGCAGTTATCGCTCAGCAATGAGTGTCCAGTCGTCCCTGGTCATGCATCCAATCAACGCTTATGGAACAGAGGAGCAGAAAGAGAAATATCTGCCAAAACTAGCGCGGGGAGAGCTGATTGGCTGTTTTGGTTTAACTGAACCCAACCACGGAAGTGACCCTAGTGGCATGGAAACCAGAGCTAAGTACAACCCTGCTGGGAAAAGCTACATCCTGAATGGTTCCAAGAGCTGGATTACAAACTCACCGATAGCTGACGTGTTCATTGTTTGGGCAAACTGTGAAGACAAAAGGATAAGAGGATTTATCTTGGAGAAGGGAATGAAAGGATTGTCGGCACCAAAGATTGAAGGAAAATTCTCTCTGAGAGCATCAATAACAGGCCAGATTGTTATGGAGGATGTTGAAGTGCCGGAAGACAATCTTTTACCAAATGTTGATGGGTTAGAGGGACCCTTTGGCTGTCTAAACAATGCTCGCTATGGTATCGCATGGGGAGCTCTTGGAGCGGCGGAGTTTTGTCTTGCCGCTGCGAGACAGTACACCCTAGATAGGTATCAGTTTAGACGACCGCTGGCAGCAAATCAACTCATGCAAAAGAAAATGGCCGACATGATGACTGAGATCACTATTGGACTTCAGAGCTGCTTGCAGGTTGGACGACTAAAGGATGAAGGAATGTATTGCCCCGAGATGATCTCTTTGATCAAGCGAAACTCGTGTGGAAAAGCGCTGGAAATTGCACGCATGGCTAGAGATATGCTTGGTGGAAATGGAATTTCCGATGAATACCATATTATTCGTCATGTGATGAACTTGGAAGCCGTCAACACTTATGAAGGAACCCATGATATCCATGCGCTGATTCTTGGAAGAGCTATCACTGGAATACAATCTTTCACAGGCAGATGAATCAACAAAAACACTGAACAAGATGGTGAACTCGGCAGAGCGCAGAAATTACACCAATCCGATTTGAATAGATAGAGTTTACAATCCCATTCCAATTTCAAACAACTATAACTTGCTCGAAATATTTAAAACGGTGAATTTCGAAAGGACATATATCTTACTGAAACAAAGGCAGTTTTGTGAGAGGACAAGTTTAAGACAAAAATCTCCATCTGCTTTTTCACTGAATTTTGATGAAAGTTTTCTGTCTTGTCAAATTTGAAGGGTGAAGATTAACAAAGTTTTGACAAACACGCTTGATTTGACAAGTAGGATAATAGTGTGATGTGGAACTTTACTAGCTATCACAAAATACAAGTTAGTTGTAAACGATAAAAGACTAAGTTAAACTTCTTATTCTATTGTGTAAGGTTGAAATTGAAAGCTTCTTCGTTTTAAGTGAAAATTTTAAGGCAGCTCGTGAATTGTTAATAATTTTTTTGAAGCATAGTAACGGTACCTCCTTAGTAACGTAAGGGATATCTGCCAAATTCGTTTTTCGGTCAAGGTAAGTCAGCAAATAGCCTGCCGAGGTAGTATTTAAAAGTTAGAGAAAGTGTACTGTTGGCATTTCATTCCCTTAGTCTTCCCTTGAATATCAGATTTCCTTTCTAACGGTGCAAAACTTTTGGTAATCAGTACAACAAAGAAAACATTAAAGTAAAACAGTTACC

Protein

Uniprot

Uniprot term	Description
Q2KHZ9	Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=GCDH PE=2 SV=1
P81140	Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa OX=9823 GN=GCDH PE=1 SV=1
Q60759	Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Gcdh PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR052033	Family	Mitochondrial Glutaryl-CoA Dehydrogenase	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42807	GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0000062	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0004361	Molecular Function	glutaryl-CoA dehydrogenase activity	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0033539	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0046949	Biological Process	fatty-acyl-CoA biosynthetic process	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan