Gene detail

Detailed information of agem_s0039.g92.t1 in Acropora gemmifera

Genomic Location: sc0000039_pilon:1267260...1278793
NR annotation: CAH3028376.1, unnamed protein product [Porites evermanni]
Species abbreviation AGEMM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0039.g92.t1

AAAGGTTCCAATCTAAAGATGGCGGACGATCGCGAACCTCCTGCCCTTTTTGATGACGATGTTGACACGCAGGAAACGGAGACAAACGAGCCTGAAGACACTAATCCATTCAATATTGGGGAGACCACTGAAATCACACTCGACGATGGAACCACAAACGAAGAAGATAGCTCAACGATGAACGGTGAAGGGCCTGCGGATATCCATGAAGATGAGACGACGGGGCCACTTGGCACTGGAGGAGCAGCTTCGGTCGATGTGACAAATCTCTCCAAACCCAGTGAAGATGAAAGCGAATCTCCCTCAATGGAGAAACCCGAGGTTAGTGATGGTATGAGTTCATACATGGTGTTCAAAGTAAACACACAGACAAGTATGGCTACATTCAAGAATGCTGAGTCGACTGTCAAACGTAGATTCAGTGACTTCCTTGGTCTGCATGAGCGACTGAACACAAAGTTTGCTCACCTGGGCCGTATTGTTCCACCAGCTCCTGAGAAGTCTGTGGTTGGCATGACTATGGTGAAATTTGGAAAGGGAGAAGAAAATAGTCCAGTTGATTTCATAGCTAAGAGGCGAGCTGCTTTGGAAAGGTATCTGAACAGGGTTGCACGACATCCCGTGCTTCGTGAAGATCCAGACTTTAGACAGTTTTTGGAGGCAGATGTGCTGCCTAGAGCTAAAGACACTGCTGCATTAAGTGGTGGGGGCTTGAAACGCCTTGTGAAGTCTATGGGAGACACCATGTTTCAACTGACGACAAAGATGCCCGAATCAGACCAGTGGTTTGAAGAGAAACAACAACAAATTGAAACTCTGGATCAGCAGCTGAAAAAACTTCACCAGAGCATGGAATTGCTTTCAATGCAGCGCAAAGATTTGAGCTCTTCAACAGCAGCATTTGCCAAGTCAACTGCAATGCTAAGTAATGCTGAAGAACACGCTTCGCTGTCTAGAGCGCTTTCTCAACTGGCAGAAGTGGAGGAGAAGATTGAGCAGATTCACATTGCGCAGGCCGATTCAGACTTCTTTATTTTTGCTGAACTTTTAAAGGATTATATTGGCTTGATTCATGCTGTTAAGGCTTGCTTTCACGAGCGTCTTCGTGTATACAGCACATGGCAACACGCCCAACAGACTCTGACCAAGAAACGAGAGGCTCTGGTCAAAGTTGAACTGGCATCGAAAAACGAGAAACTGCCACAAGCTCAGGAGGAAGTGAAAGAGTGGGAACAAAAAGTGGAAAAGGGTGAAGAAGACTTTGGGAAGATTTCCAAAATGATTCAGAAGGAAATTGCAAAGTTTGAGAAAAACCGAGTTAAAGACTTCCGTGAAGGAATGATCAAGTACCTGGAAGCCATGATGGACAGCCAGCAGCAGTTGATCAAGTACTGGGAGGGATTTCTACCTGAAGCCAAAGCAATTGCATAGCCAGTAGATTTATTTTATTAAATAATAGTTTTATACTAATCATTGTACACAACTATTCAGTTCGAATCGATTTGTGTTTTTGTTTTGGTAATTGAAACACTTCACCTAATTGTTAATTGAAATTTCTGCAACATGAGCGGTTTTTAATTGTGTCGCCTGGAGGTGAGGGGAACGCTTAAGCTATGCTAAAACATAGCCGATCTGTTGTGATTCTatccgttttagctaatgtatttcttttattcattttgcatatatcttatttttcccaattagaagacttgcaagtcatgccgcatgctatttcgtaaactcatccttttttccctcgcttCCTTTCTCCTCCAGTGAGGGGCAAAACATGCACGCAGTCCCCTCCCTTAAGAAAAAAACCATCAGGCCTGCATTCTGATGAGTTTGGTCAAAGTAATTGGCGTCAAATTTGACGTCATTTAATGGTAAACCGCGCCTTATATTTTTCTTTCATCTCAAATACTTTTGTTAAGAACAAGGGTATTATGGGGCTCAGTATTGTGAGTATCAGTTCCTTTTATGTCAGCCTCTTTGAAACGTCTTTTCAATTGAAACGCTGTTAAACTAAGTTGATCAGTATGAATTTCGGTGCATTTGTCATGAATTTCTGACGCCCCTTATAGAGTCTTCCTCAGTCAAGAGGCGATTATTGTGAATTCAATTACTTAGGCATGGAAGAAAACGGTGATTAAACAGTTCCAAGCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TBW7	Sorting nexin-2 OS=Bos taurus OX=9913 GN=SNX2 PE=2 SV=1
O60749	Sorting nexin-2 OS=Homo sapiens OX=9606 GN=SNX2 PE=1 SV=2
Q9CWK8	Sorting nexin-2 OS=Mus musculus OX=10090 GN=Snx2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006131 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09325 all species →	Vps5	Vps5 C terminal like	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR015404 all species →	Domain	Sorting nexin/Vps5-like, C-terminal	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10555 all species →	SORTING NEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17917	SNX1_2; sorting nexin-1/2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.