Gene detail

Detailed information of agem_s0042.g99.t3 in Acropora gemmifera

Genomic Location: sc0000042_pilon:1261814...1283570
NR annotation: XP_015762418.1, PREDICTED: kinesin-like protein KIF3A, partial [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0042.g99.t3

ATGAAGGATCAGAAGGCGATAAAATCACGTCAAGGTGAATCTGATAGAATACGCGTTTATGTCCGAGTGAGACCCAGAACTTTTGAAGAAGGAAATCGGCAAGAAAGCCTTGGAGTTGATGTCGAGTCATCGAGATCTCAGGTTTCCTTAAACGATTCCAGAGAACGTCGATACAAGTTTGACAAGATATTCTCTCCACAAGCCAGTAATGCAGAGGTGTACAATGCTGTGGGAAAACCATTGGTGGATGCAGTTTTTTCCGGTTTCAATGGAACGCTCATGGCATACGGACAAACGGGGACCGGCAAGACCCACACTGTTATGTCCAGTGACGGCATGTGTGTCCACGTGGTTGAAAAACTTTTTAAACGGATCAAGCTGGACAAGTACCATGACTACCAGGTGCAAGTCTCGTATCTGCAGATCTACCAGGAAAAGATATACGACTTGCTTAATATTAACTCCAAAGTGGAGCTTGTGATGCGGGAAGATCCAAAGAAAGGCGTCTATGTAGAGAATCTTTCAAGCTTTATTGTACGCGACACCACAGACATTCTCTCCTTAATAAGACAAGGAAAGAAGAAGCTCATCTTCGGTGAAACTCGAATGAACAGAGCCTCCAGCAGATCTCATTCAATATTTCGGATAACTGTAGAGCGAGCACATGGCACAGGCAGCAAGAAGTCAGCGACATCCGGTGTTACTAGCGCAAGTGAAAGCAATCTCGCGTCTTCTTCTCCCGTCAAGCCATCTCTGTCATGCGCGCTATCGTCACGCAAATCAGCGCAATCTACAAGTAGCTTGGATCGTCTTCGTGAAGAGACGACGCCAAAACGTTTGCCTCCGAAATCCGGCTCAATAGGAAAACAGAGCTTCATTCCACGCAAGACGTCGACACCAGCACGCTCAGACACTTGCAGGCACACTCTACATTTGACGTCCCTCCCAGAAATCTCACTTCCGGCTCTATCACGGCCAAACCGGTGGTCACTCATTGACACGAGTCATGGATTCTCAGGGGCAGGAGTCTCTTCACGTTCGCTGAACTCACCAAGCGATTCAGAAGGCAGTGAATTACAGTTTTCCATGGACTCTTTGCTGGAGAGTGGGACAGAAAGTGAACGATGGAGTGATCCTGGAAGCCCTAGCATTCTACAGTTCGAGGACGACGACGAAGATGAATCATTCTTGGAAAGCATCAAGATCGGCGAAGATGTACTGATTACTGGAAGAATTAACATCTGTGACCTCGCCGGAAGCGAGCGAATAAAGAAAACCGGAGCTGAGGGAGAACGACTTTCTGAATTACAACATGTTAATTTATCGCTTTTGGAGCTGGGGAACACAATACACGCTTTATCTGAAGGAAAGCGAACCCACATTCCTTACAGAAACTCTCCCCTCACACGACTGTTGCAAGATAGTCTCGGGGGAAACTGCAAAACAAGTTTTGTGTTGTGCATTTCACCGTTGCTGAGAGATGTTAACGAGACTCGATGCACGTTGGACTTTGGTCAGCGGGCGCTTAAAATAAGTTCGACAGCCTATGTCAATATAAACATTGATTACATGAAGTTATCGCAAGATTTAAGGAAGAGGTGCGAGATTCAAGACATCGATTACAGCGCCACAGTTGCTCAAACAGCGACCCTTCTTGTCTCAATTTTACTCCTACGCAATCTCTTCATCGAGGCAGTTCATTGGAAAATGAATTTAATCGAGAAGATTTTCAGGAAATCATCGCGAAAAGGAGAATTGGAAATAAAATCACAGAAGGAGAATTTTGAGAAGCAAAATATTGCTATCAAATCGGACGCCGAATTGAAACTTGCTGAAATACAGGCGCTTCTGGAAGCTGAGAGGGATCGTCATAAGATCGAGATTACAAACCTTGAGAAGGAAAAAGAAAACCTAGCAAAAGCGCTCTTTGACGAGAGAAGCCAGAGGCGTGTCCTTGAAGGAATACACCATGCTTCTCTTGAAGCAGCTTTGCTTGTAGATCGTCAACGAATCTTAAACAACGAAGAGGACGAGAAAAAGCCCCCGCAAAACGCGCTGGACGAAGAGAGACGGCGTTCCTGGGTGATTGAACAACGCATGAAAGAGGAATACGACAGAGCACTTGCGGATGAGCACAAAAGAGCAGAGATGGTGAAGCAACTCGAACAGGAAGGACTCGGAAAGACACTCGAGGAAGAAAAAAAAAGGCTTGATGAATTGGAAGAACGACTTCAGAAATCTCCTAGTCACGAACGCTACACACAGACAGCAGCCATGTTGGAGGAAACAGAGTTTCCACGGATGCCTCCGGGCACAAATCAGACTGAAACACTGTATAATGTTTTACTCGCTGAGATCATGTCACTGCAGCTACTGTATCAAATGCAAGATCTATCACAGGCATGTAGCGCTGATAACCCGCAGTCACGTGATAGCGGTTGCGCAGAGTACGAGGAGGACGTCATTCACTGCGTCAGCTCAACCGTCTTAGAGAAAGGAGGGTTGCTGTTGAACAATTTACGGGCAAGACAGAGAGGAGAAAGTCGGTTTTCTCTACAAAGCACCGACTCCTTGCGAGAGCTGTATTTCGTTCAGTTTCCTCAATCTCCGAGGCTTTCTCGGGATTCGCGAAAAACCGGATCAGTTCCGATTATTCCCGTAAAGAGCTCGTTAGCTGAGCTGAAGTGTGAATCAAAGAAGAGTTTCTCGTCAACAGACTCCGTGGAAGCATGCCGAGGACGTAACGGTAGCTCTAGCTCAAGCATGGAGTCCTTCCTGGATGACGAACCTCTGAAGCTGCGCTGTCGAAATCGGGCAATTGACAGCGGCTGCAGTAGTCTGCAAAGTGACTTTGATCACTCGTCCAAGGGGGGTGAGGTACAGCTGAGCGATTCAACTGGACGCACACGGGCAAACACATACCCTGCCAAGCTGTGCAACGCCAGCACCTGCGTACCTTTGGCGGAAGAAGAGGACGAGGATTTGGAGTTTTTGGGTGACGTTGTTGAACGTGATGAGATTCAATCCGTAAAGAACAAAGTCGTCCACTTGAAAAACGACTTGTGCCGCTTAAAAACCGAACTGGATTCAGAGACGGTCAACTTCTTTTCAGAGGTTTTTGGAGTAGAAGTGCCATTCCTTCGAGAAGGAGAGCTGTCACGTGTCATGAGACGTTTATTCGAAGGCGTCAGAGAGAAACTGCTGTACAGATTGTGCGCAAGCGCTGAAAACAGCGAAATTACAGGGGAAGACGGACAAGACCTTGACCTAGACCCTCCCCTACTGGAGGAGGCCGTGAACCTGTTACTGGTGAACAAGACAGTAATGAGCTGTATTCTTGTATTGCAAAACAGAGAAGACTCTCAGATGAGCCATGAATCAACCAGGACAGAGTTCCCAACTGTCATTCGAGCCCCTCTTAAGGTGGACTGCGGAGTGCAAGTGGACTTGGAACAAGTGCGATCGCTTAGAAGACGAATCCGGAAACATGCTGGAGTGATGACAGATCCACCACAAAAGATCCAAAATTGCCACAAAGAATGCCAAACCAGTACACAAGAAATATCCAACGGCGAAACAACAGAAACCTTTCCCGATAGAGACCTTGAAACGTGTCAAGATCCTTGGTTGCGCAAATCACAGTACAGCCTGGAACGAGTCCTTCACAATAGCGCTCACTTGTTAACACGCGACCCTGACGGCGCTTCGGTCAACGAAGACAGACTAGTCAATCGAGAAGCGAACGGTGATCATATGGAATCGCAGAGCGACAATTCGATGGGGTCACACTTGGGTATGGACTTACATGAACCACGTGGAAAGAAGATCAAAAAGGCTTCTATCTTCTCATGTCTTTGTACTACAAGACTATCATCTAGGAAAAAGACCAAAAAGGCTGGTAAATCCAAGACAGAAAATAGTGAGGTTGTGAAGACCATTTAA

Transcript

agem_s0042.g99.t3

TATCGATTTTCTTGTTTCCTCAGGTGTGCTTCGAAAAAAATTTGTGTCACAACGCCAATGTTTTCATAACATTTAAAAATATTGGCATAAATTTTCTAGTTGGTGGTAATTTTGTCACGTGTACCTTTTAAGAGAGGACTAAATATATCTGGATGACATGATTATGCGAGCGAATTTTCGACTGCATTTTAGGCGATCGGCTTTCAAAATGGCACTGTCAGATTAACTGTTCGTTTATTGACATTAGATGAAATTGTCTGCACAAAGATGAAGGATCAGAAGGCGATAAAATCACGTCAAGGTGAATCTGATAGAATACGCGTTTATGTCCGAGTGAGACCCAGAACTTTTGAAGAAGGAAATCGGCAAGAAAGCCTTGGAGTTGATGTCGAGTCATCGAGATCTCAGGTTTCCTTAAACGATTCCAGAGAACGTCGATACAAGTTTGACAAGATATTCTCTCCACAAGCCAGTAATGCAGAGGTGTACAATGCTGTGGGAAAACCATTGGTGGATGCAGTTTTTTCCGGTTTCAATGGAACGCTCATGGCATACGGACAAACGGGGACCGGCAAGACCCACACTGTTATGTCCAGTGACGGCATGTGTGTCCACGTGGTTGAAAAACTTTTTAAACGGATCAAGCTGGACAAGTACCATGACTACCAGGTGCAAGTCTCGTATCTGCAGATCTACCAGGAAAAGATATACGACTTGCTTAATATTAACTCCAAAGTGGAGCTTGTGATGCGGGAAGATCCAAAGAAAGGCGTCTATGTAGAGAATCTTTCAAGCTTTATTGTACGCGACACCACAGACATTCTCTCCTTAATAAGACAAGGAAAGAAGAAGCTCATCTTCGGTGAAACTCGAATGAACAGAGCCTCCAGCAGATCTCATTCAATATTTCGGATAACTGTAGAGCGAGCACATGGCACAGGCAGCAAGAAGTCAGCGACATCCGGTGTTACTAGCGCAAGTGAAAGCAATCTCGCGTCTTCTTCTCCCGTCAAGCCATCTCTGTCATGCGCGCTATCGTCACGCAAATCAGCGCAATCTACAAGTAGCTTGGATCGTCTTCGTGAAGAGACGACGCCAAAACGTTTGCCTCCGAAATCCGGCTCAATAGGAAAACAGAGCTTCATTCCACGCAAGACGTCGACACCAGCACGCTCAGACACTTGCAGGCACACTCTACATTTGACGTCCCTCCCAGAAATCTCACTTCCGGCTCTATCACGGCCAAACCGGTGGTCACTCATTGACACGAGTCATGGATTCTCAGGGGCAGGAGTCTCTTCACGTTCGCTGAACTCACCAAGCGATTCAGAAGGCAGTGAATTACAGTTTTCCATGGACTCTTTGCTGGAGAGTGGGACAGAAAGTGAACGATGGAGTGATCCTGGAAGCCCTAGCATTCTACAGTTCGAGGACGACGACGAAGATGAATCATTCTTGGAAAGCATCAAGATCGGCGAAGATGTACTGATTACTGGAAGAATTAACATCTGTGACCTCGCCGGAAGCGAGCGAATAAAGAAAACCGGAGCTGAGGGAGAACGACTTTCTGAATTACAACATGTTAATTTATCGCTTTTGGAGCTGGGGAACACAATACACGCTTTATCTGAAGGAAAGCGAACCCACATTCCTTACAGAAACTCTCCCCTCACACGACTGTTGCAAGATAGTCTCGGGGGAAACTGCAAAACAAGTTTTGTGTTGTGCATTTCACCGTTGCTGAGAGATGTTAACGAGACTCGATGCACGTTGGACTTTGGTCAGCGGGCGCTTAAAATAAGTTCGACAGCCTATGTCAATATAAACATTGATTACATGAAGTTATCGCAAGATTTAAGGAAGAGGTGCGAGATTCAAGACATCGATTACAGCGCCACAGTTGCTCAAACAGCGACCCTTCTTGTCTCAATTTTACTCCTACGCAATCTCTTCATCGAGGCAGTTCATTGGAAAATGAATTTAATCGAGAAGATTTTCAGGAAATCATCGCGAAAAGGAGAATTGGAAATAAAATCACAGAAGGAGAATTTTGAGAAGCAAAATATTGCTATCAAATCGGACGCCGAATTGAAACTTGCTGAAATACAGGCGCTTCTGGAAGCTGAGAGGGATCGTCATAAGATCGAGATTACAAACCTTGAGAAGGAAAAAGAAAACCTAGCAAAAGCGCTCTTTGACGAGAGAAGCCAGAGGCGTGTCCTTGAAGGAATACACCATGCTTCTCTTGAAGCAGCTTTGCTTGTAGATCGTCAACGAATCTTAAACAACGAAGAGGACGAGAAAAAGCCCCCGCAAAACGCGCTGGACGAAGAGAGACGGCGTTCCTGGGTGATTGAACAACGCATGAAAGAGGAATACGACAGAGCACTTGCGGATGAGCACAAAAGAGCAGAGATGGTGAAGCAACTCGAACAGGAAGGACTCGGAAAGACACTCGAGGAAGAAAAAAAAAGGCTTGATGAATTGGAAGAACGACTTCAGAAATCTCCTAGTCACGAACGCTACACACAGACAGCAGCCATGTTGGAGGAAACAGAGTTTCCACGGATGCCTCCGGGCACAAATCAGACTGAAACACTGTATAATGTTTTACTCGCTGAGATCATGTCACTGCAGCTACTGTATCAAATGCAAGATCTATCACAGGCATGTAGCGCTGATAACCCGCAGTCACGTGATAGCGGTTGCGCAGAGTACGAGGAGGACGTCATTCACTGCGTCAGCTCAACCGTCTTAGAGAAAGGAGGGTTGCTGTTGAACAATTTACGGGCAAGACAGAGAGGAGAAAGTCGGTTTTCTCTACAAAGCACCGACTCCTTGCGAGAGCTGTATTTCGTTCAGTTTCCTCAATCTCCGAGGCTTTCTCGGGATTCGCGAAAAACCGGATCAGTTCCGATTATTCCCGTAAAGAGCTCGTTAGCTGAGCTGAAGTGTGAATCAAAGAAGAGTTTCTCGTCAACAGACTCCGTGGAAGCATGCCGAGGACGTAACGGTAGCTCTAGCTCAAGCATGGAGTCCTTCCTGGATGACGAACCTCTGAAGCTGCGCTGTCGAAATCGGGCAATTGACAGCGGCTGCAGTAGTCTGCAAAGTGACTTTGATCACTCGTCCAAGGGGGGTGAGGTACAGCTGAGCGATTCAACTGGACGCACACGGGCAAACACATACCCTGCCAAGCTGTGCAACGCCAGCACCTGCGTACCTTTGGCGGAAGAAGAGGACGAGGATTTGGAGTTTTTGGGTGACGTTGTTGAACGTGATGAGATTCAATCCGTAAAGAACAAAGTCGTCCACTTGAAAAACGACTTGTGCCGCTTAAAAACCGAACTGGATTCAGAGACGGTCAACTTCTTTTCAGAGGTTTTTGGAGTAGAAGTGCCATTCCTTCGAGAAGGAGAGCTGTCACGTGTCATGAGACGTTTATTCGAAGGCGTCAGAGAGAAACTGCTGTACAGATTGTGCGCAAGCGCTGAAAACAGCGAAATTACAGGGGAAGACGGACAAGACCTTGACCTAGACCCTCCCCTACTGGAGGAGGCCGTGAACCTGTTACTGGTGAACAAGACAGTAATGAGCTGTATTCTTGTATTGCAAAACAGAGAAGACTCTCAGATGAGCCATGAATCAACCAGGACAGAGTTCCCAACTGTCATTCGAGCCCCTCTTAAGGTGGACTGCGGAGTGCAAGTGGACTTGGAACAAGTGCGATCGCTTAGAAGACGAATCCGGAAACATGCTGGAGTGATGACAGATCCACCACAAAAGATCCAAAATTGCCACAAAGAATGCCAAACCAGTACACAAGAAATATCCAACGGCGAAACAACAGAAACCTTTCCCGATAGAGACCTTGAAACGTGTCAAGATCCTTGGTTGCGCAAATCACAGTACAGCCTGGAACGAGTCCTTCACAATAGCGCTCACTTGTTAACACGCGACCCTGACGGCGCTTCGGTCAACGAAGACAGACTAGTCAATCGAGAAGCGAACGGTGATCATATGGAATCGCAGAGCGACAATTCGATGGGGTCACACTTGGGTATGGACTTACATGAACCACGTGGAAAGAAGATCAAAAAGGCTTCTATCTTCTCATGTCTTTGTACTACAAGACTATCATCTAGGAAAAAGACCAAAAAGGCTGGTAAATCCAAGACAGAAAATAGTGAGGTTGTGAAGACCATTTAAATCTGAGTTTTGAGTTAAATTAAACGTACAAGGGACAAATGAAAACGCTGCGGTGTGAGTCGTGTGAGAGACAATAGGAATTACTCATACTGTTAAGGGCATTCTTAGAGCTCTTCAATTTTTTTCATTTGCTTCGACACACGACCACTTTAAGAGAAGATTCAGGGAAACTATGTACAGTAACTCCTAAACAGGACTGAAATGAAACAAGTCTAGAGCATAAGGAACTATTCATCAGTTGGATCGATTGAGATAAAAATAATGTTCAATTCTCATTCTCTTAAAAATTAATGTAATATTGATTGTAAGAATATACAAAGACGAAATACATTTTACGGCAAATTGTGGCATGGGTTTGGATCAAAACGATACCCTGTGCTACTTCTGCTACAACAATTGTTTTAGTTTTGGTTTGCTCCACATCAAGTTAAGCCACTCAATACAATCGAGAAATTTTTGGACAAGAAACTTAAATCATGTGAATTCGTCAAAACCAAAATTGTTTGTCTTATTTCCTTGCAATTGCTGAAGTATCCATTTTAACTAAGTTATTGCTGACAAAGGTACGCAAGTTCCTTCTAATTGTTAGCAAGTTTCGTTGCACTTTTTTATCACATTTAACTTGGCAGTTTATCTAAGGTAAATCAGATCAAAATCGCTGGGCCACCACTTACGCATGCGTGATTAAGGTGTATTTTTTTCGCAGCGGAGACTCCAATTTTCAGCTGAACCGCCTTCAAGTATAACTAGGCAAGTGGTCCCTAATTTTCGCACAAAAATCCCAGGGAACGTACAAAACAGACAGTGTCATGCAAAAAAATTAAACCAAAGCTAATCATTTAAAAAGAAGAATACACTGAAAAAATAAATAATCAATAACAATAATAATAATAGGAAAAAAATCAATTAAATGTTATTGTTGTAAAATTTTTATTTAACTTTTATATTCAGGATTTAGGGAGAGCGAATATAGTCAGAGTCGTCTGCTAAAATAGATTGGTAATACTTAAAGTTTTGCTTTTTTTTATTTTTATAAGACAAATTAAAGCAACTGTTTAATTTACTCAGCACAGTATAAAGGCCGACTTCTCCATTTATTGCGGATATTGTTTTGAACACAAGCTTGAAATAAAGAATATCTTACGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46872	Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus OX=7668 GN=KRP85 PE=1 SV=1
Q965T6	Kinesin-like protein klp-20 OS=Caenorhabditis elegans OX=6239 GN=klp-20 PE=1 SV=1
P28741	Kinesin-like protein KIF3A OS=Mus musculus OX=10090 GN=Kif3a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000590 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47968 all species →	CENTROMERE PROTEIN E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17916	KIF16B, SNX23; kinesin family member 16B	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.