Gene detail

Detailed information of agem_s0044.g9.t2 in Acropora gemmifera

Genomic Location: sc0000044_pilon:162256...173826
NR annotation: XP_029194711.2, LOW QUALITY PROTEIN: methylthioribose-1-phosphate isomerase-like [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0044.g9.t2

CTCTGGGGAGGGGTGACAGTGTGGCTGCGACTATCAAAGCGAGGTAAGACACGTCGAGAAATTTCCTGATCTTTCAAAAAATAATGTCACTTTTGGCCATAAAGTACGAACGAGGTAAACTCGAGATACTTAACCAACTTCTTCTTCCTCATGAGTCCATTTACGAGGAAATACAAAGTGTTGAAGATGGCTGGGGAGCGATTCGATCGATGAAAGTTCGAGGTGCACCAGCCATAGCCATTGTTGGTGCACTGAGTTTATCAGTTGAAATGCTTGCCAAGTCATTCAGCTCAGTGGAGGAACTTTTCCATTTCATTCAAGAGAAAATGGAATACCTAACAACAGCGAGACCCACTGCAGTCAATATATCAGAAACTGCAAAAGACCTGATCTCTTTCGTGAAAAATTTGTCAGCAGCGAAAGTGGATGCTGACGATGCTAAGATGAGAGTAATTGACAAAATTGAAGGGATGTTAGCCAAGGATGTGAAGGACAATCAACATGTGGGCAGATATGGAGCAGCACATATTTTAGAGCAGACAGAAGTCGAGAAGCTGAAAGTACTTACTCATTGCAACACAGGTTCCTTAGCGACGGCTGGTTATGGGACTGCGCTCGGTGTCATTAGAAGCTTACATGAAGGAGGTCATATTGACCATGTTTTTTGCACAGAAACAAGACCATACAATCAAGGCTCCAGACTGACAGCTTATGAGCTGGTTTATGAGAGCATTCCTTCAACTTTAATTGCAGATTCCATGGTGTCTTTGCTTATGAAAGCAAAAGGTGTACATGCTGTCGTCGTTGGTGCCGACAGGGTGGTTGCTAATGGTGACACAGCCAACAAAATAGGAACTTATCAAATTGCTATAACTGCCAAGTACCATGGAGTTTTGTTTTACGTTGCTGCACCCTCTTCAAGTATTGATATGACGCTGGAGAATGGTCAGCAAATTTCGATTGAGGAAAGACCTCCTCACGAGCTGACAGTGGTTGGGAGTACACGCATTGCGGCACATGGGATTGGCTGCTGGAATCCAGGCTTTGACATCACTCCAGCTGAACTGATAACGGGAGGTATTATTACAGAACAGGGAGTCTATCAACCTTCACAGCTGAAGGAGGCATTATCTGACAGACTTAAACCCTTGACATTGTAAAGGGAACTTTATTGAACTGCAAACATGGAAAGGGTCACAGGGTTGAAATGGGGTCAGAGAGACTGCGTAGTCAAGGCTTTACTCAGCATAAATCTCTTACAATTACAGGGGGATAAAATAAGATGACCTCCAATTGAATTCAAAGTTAAAACTGCTGAAAAAATTACACTCATAAAATAGGCAAACCAAACATACCAGTAAGCTAAGCTAAATCTTGCTCAGTTCAGTGTTTCTGATTATAGGAAACTTTGCCACAGATTGTTTTTTTGGTAACTTCCAAACGGGTTCCCCACTGGGCAGCAATATCAAGTGGTGCAAACAAGAATAAATCTGCAAGCATTACTGTTAAGTTTAGAAAAATGGTCAGGGATGAATCACCATCATTCTCATTTACCATTGGTTTCAAATGATAATTAATTTGGTTTATCAGCTGGGTGTTGCACTATTTTTACTCTCTATATTATATTAACCATCAATCAATTCAATTTTGAAGGGTGTCAGTGTCCAATTTTGTCATATTTTTAACTTTCTCTTTCATTTCAGAAAATTTTCTGCAGTAAACCCCCAAAATTCTATAGGGCACAATCTTTTTTACTTTGCTTGGCCCCAGTTGTGGATAGCATTAGTCACAAATGAGTAGGTTTTGGTTGCATTTCTCCAATGGATAGTGATTTTTCGGCTGGATTGAATTACCCAATCTTTGAACAACTAGAGGCCAGGAATTTGCATTTCATTAATAAACCATTCACTCGTACCATTCATTCATCTTTCATTACTCGTGCCAGGCCAAAGGCCGCGCAGAAAATTAAATCTCGGCCGTTTTGGCTCATATTCTTTCTGTTGCGTCAACTTACTCTCAACGTATCTACGCATACGCGATTTTTTTTTTGAAAACATTGATAATGGTGTGGAGTCAAAAAACCAAGTACCATGGAGTTTTGTTTTACGTTGCTGCACCCTCTTCAAGTATTGATATGACGTTGGAGAATGGTCAGCAAATTTTGATTGAGGAAAGACCTCCTCACGAGCTGACATTGGTTGGCAATACACGCATTGCGGCACATGGGATTGGCTGCTGGAATCCAGGCTTTGACATCACTCCAGCTGAACTGATAACGGGGGGTATTATTACAGAACAGGGAGTCTATCAACCTTCACAGCTGAAGGAGGCATTATCTGACAGACTTAAACCCTTGACATTGTAAAGGGAACTTCATTGAACTGCAAACATGGAAAGGGTCAAAGGGTTGAAATGGGGTCAGAGAGACTGCGTAGTTAAGGCTTTACTCAGCATAAATCTCTTACAGTTACAGGGGGATAAAATAAGATGACCTCCAATTGAATTCAAAGTTAAAACTGCTGAAAAAAATTACACTCATAAAATAGGCAAACCAAACATACCAGAAAGCTAAGCTAAATCTTGCTCAGTTCAGTGTTTCTGATTATAGGAAACTTTGCCACAGATTGTTTTTTTGTTAACTTCCAAACGGATTCCCCACTGGGCAGCAATATCAAGTGGTGCAAACAAGAATAAATCTGCAAGCATTACTGTTAAGTTTAGAAAAATGGTCAGGGATGAATTACCATCATTCTCATTTACCATTGGTTTCAAATGATAATTAATTTGGTTTATCAGCTGGGTGTTTACCATCATTTTTACTCTCTATATTATATTAACCATCAATCAATTCAATTTTGAAGGGTGTCAGTGTCCAATTTTGTCATATTTTTAACTTTCTCTTTCATTTCAGAAAATTTTCTGCAGTAAACCCCCAAAATTTCTATAGGGCACAATTTTTTTTTACTTTGCTTGGCCCCAGTTGTGGACAGTTGTGAGTAGGTTTTGGTTGCATTTCTCCAATGGATAGTGATTTTTCGGCTGAATTGAAGTACCCAAGCTTTGAACCACTAGAGACCAGGAATTTGCATTTCATTAATAAACCATTCACTCGTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RF00	Methylthioribose-1-phosphate isomerase OS=Nematostella vectensis OX=45351 GN=v1g237765 PE=3 SV=1
A9JRE2	Methylthioribose-1-phosphate isomerase OS=Danio rerio OX=7955 GN=mri1 PE=2 SV=1
Q4FZP2	Methylthioribose-1-phosphate isomerase OS=Xenopus laevis OX=8355 GN=mri1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01008 all species →	IF-2B	Initiation factor 2 subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005251 all species →	Family	Methylthioribose-1-phosphate isomerase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR027363 all species →	Homologous_superfamily	Methylthioribose-1-phosphate isomerase, N-terminal	Interproscan
IPR042529 all species →	Homologous_superfamily	Initiation factor 2B-like, C-terminal	Interproscan
IPR000649 all species →	Family	Initiation factor 2B-related	Interproscan
IPR011559 all species →	Family	Initiation factor 2B alpha/beta/delta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43475 all species →	METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019509 all species →	Biological Process	L-methionine salvage from methylthioadenosine	Interproscan
GO:0046523 all species →	Molecular Function	S-methyl-5-thioribose-1-phosphate isomerase activity	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0044249 all species →	Biological Process	obsolete cellular biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08963	mtnA; methylthioribose-1-phosphate isomerase	EC:5.3.1.23	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.