Gene detail

Detailed information of agem_s0045.g4.t1 in Acropora gemmifera

Genomic Location: sc0000045_pilon:262266...269345
NR annotation: XP_015754405.1, PREDICTED: epididymal secretory protein E1-like isoform X1 [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61916	NPC intracellular cholesterol transporter 2 OS=Homo sapiens OX=9606 GN=NPC2 PE=1 SV=1
P61918	NPC intracellular cholesterol transporter 2 OS=Macaca fascicularis OX=9541 GN=NPC2 PE=2 SV=1
P61917	NPC intracellular cholesterol transporter 2 OS=Pan troglodytes OX=9598 GN=NPC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000868 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02221 all species →	E1_DerP2_DerF2	ML domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039670 all species →	Family	Sterol transport protein NPC2-like	Interproscan
IPR003172 all species →	Domain	MD-2-related lipid-recognition domain	Interproscan
IPR033916 all species →	Domain	Npc2 like, ML domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11306 all species →	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0032367 all species →	Biological Process	intracellular cholesterol transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13443	NPC2; Niemann-Pick C2 protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.