Gene detail

Detailed information of agem_s0047.g12.t2 in Acropora gemmifera

Genomic Location: sc0000047_pilon:208666...211996
NR annotation: XP_015755223.1, PREDICTED: uncharacterized protein LOC107334767 isoform X1 [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0047.g12.t2

CGTGTACTGGGAAGGTGAATTTTTTGTCTGAAGCAGCAAGCAAATTCTGTTTTTTCTTTTGAACATTTTTGTCCAAAGATTGCTTATAAATTATTAGCCCAAGCGATATTTTCATGTGCCTGAAAACTTGTCCAGAAATCTATGAGATGTATGTTTGCGACAAGAAGATCATGGACGACGAAAATATAATGTTGAAGCCACAGAAAAGGAAAAAGATACGCCGTCTGAAGAAACGAAAGTTCTACGAAAGATCGAGCGAGAGCCAAGTTCCATTAAAACAACGAAAGACGAAAACAGCCGCTCCAGAAAATACAACACAGTTCATCATGGCCGACAAAGAATTGGCTGAACCATTTTATGTGATCCCTTCTCCATGCTCGTCACCCGCGAGCCATTACACAAGCTCTCCTGGATCGATTCAAGGAACACCATCTTCAGAAAGAGACTTGGGTTTCGATTCAACAGAGGAAGATCTTGTTCGTGAGTTCAACCATCTTGATTTCGACTTGGATTTCTTTCACAGGGACTTCGAAGCTATGTATAATCGTATTCAAGAGGAGAGTTTACTTTCTCTTTCGAAAGGCGAACTTGTTAGTAAATACCGTGAACTTGAGGGGAAGGAGGAACTTCTTCAGAGGCAGTGCCAAGAACTATCAAACGGCGTCATTTTCGGTGAAGACGAGGGTTCTCTTCGGAATAAAAATTCATGCTCGACCACCAACACGTTTCCCGCGCGCTTGGCGAAAATATCTGAGGAGGAGAATTTGCTTCGTCAGCTCGAAACATTGCAGAGAGAGAACAGATCACTGGCTGAAGAGAATTTGAGGTTAAAAGGTTTCAAATCATCTTCAGTAGAGATTAATCGGTTGTCTTAATTCAAAACGGAATATATTTAATAATCAAAGCGAATGGGCTTTTCGATGCCGTAAACATGAAATTTCGCTTGAAATACGAGGTCACTCGGAAATTATTCGCTTGGTCTTGCGTTCAAGCTTAGACTTAAATAATCAAATTGATTTGTGTAGTTGCGAAAGAAATGGAAGTGTAAGTTTTGAGATTTCCTGTTTGTTGAATCGTTGTTGGTTTTATGAGTTGGTAGGTTTTGTGTGAAATGATTTATTCATGTTGGTAGAAAGAGGTCTTGATTGCGTCAGCGTTGGTTTCCATATATGGATATGACTTTATGTTGTTTCAGTTGTAACTTGAGTTTCAACACAGATGAATCTTTGGACAAGAAAGTCAGTCTTTTGAACTTCAATAGTATGTAACAGTAGATACTGGTGATCATTTCATGGCATTCTGTTGCTCAGTATTTTAAGCCTTGGTATTGTCTTGTTATTAATGTTGTAAGTGATACGGTAGGTAACTGGTGGACTAAAATATCAAGTTTTCCACCCCAGGCCTTTATAGTTACATACCAGTGGCATAGCCAGCAGATCAGTGCACACCACATTGTTGTCCTGTGAAGACTTGTTGTCAAGCATAGCTGACAATTTTCCATGGACAAGCTGAGTGGTGGTGAATGGCAAGTGGAGTATCCATTACTCTCGCAACACCTGCTTCTCAGTCAAAGCTAAGTATGGCCTCTTGGTTCTTAAAAATTCTACAGCACTGTGCTGGTGGAAATGTTTTCTTTTCTTGTCATTCCTTTCAATTTGACAAATTGTTACTTTGGGTTTGTATTATCCATCAACAAGGTTAAGCCGTGAGCTAAACTGAACTGCAATGTTCCCTCCTTGTTTGGAAAGGAAATCAGACAGATCTACAGGAAACAGGTAACCCCAGTTTGGAAATCCTTTATAGTTTGTGTACGGTCATTATCAACTTGAGAAACTAAAATGACAAGGATGGGTTGCGTTCAGTTCATCATAACATGGACAAATGGTTGACTTTGGAGGTCATTGTTAAGTGGGAACCAAGAATATCAGTGAGGTTAAAAATGATCCCTGCTCTTATGAATGTAATGAGGTTCATAACAGTGAGGACCATTCTTGACTTCATTTCATTTCTGTTGGTCATGTATACATTCAGCTCATATCCCTCATTTCTATATAATTTATGTGCTGGTAAAGAGTCAAAAGTTTGTCTACATTCAACCTGTTTCTCTCATCTCATTTTTGTGGTAGTGGGCAACAAAAATTTTGTCCTGTGGTCTCTATGATGTCCCTTTTGGACCAGATTATACTGTGGTTAAAGGTGGGAGGGCAACATTGGATTTTTGTGGGGGTTGGGGTGTTATTGTGTCTTCTGGTTTCTTTCAGAAAAGGACCTGACTGCACCTTGCAGCAGAATTGACTTGAATGGCTTTAGGTGTAAGTTTGTCTTGCTCCCCTCAACACCTTGCTCTAAATTTGTGGTGTCTTCATTAAAATGAGTCAAATTAATGATTATTGTTGCCAGTGTGGTTTATATTTTGTTTGTAAATTATTGTTCCTCTTGCCTTTCATTAAGCAGATGTGGCTTAACTTGTGAGCTGCTTTGCTTAGAGGTCAAGACTTAAGAGTCATCTATCAGGCAttgtgccataagctaaattctatgtgcgtcttagtaattggtctctatctatgatctatcggaggacaaaggcattaataacatgacttaactttttcgcctctttttataaaacaaatagattccatgttgctgtgcatcggttccaaatagatcacgcaagatgtcaaaatgtggtaagaacatcagtgaaactctaaccttgtttgccctttttttttgttcttaccacatttcgatgttatctgttactgaacagatgcacatcaacatggaatctgtgtgttgaatGTTGAAGAACACAAATCACTTGTCATTTTTCAGAATTAGTTCTGTGCTCGTTGCTAGTTTCCTTGTTTGGTAAATGTTGCTTGTTTTTAATGCAGTGTGCCAGGGCTGGCACTAACCTTTCAAATAAATCAATCGTTTTTAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009946 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15313 all species →	HEXIM	Hexamethylene bis-acetamide-inducible protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024872 all species →	Family	HEXIM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13469 all species →	HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0004861 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase inhibitor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0045736 all species →	Biological Process	negative regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0097322 all species →	Molecular Function	7SK snRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0047.g12.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.