Gene detail

Detailed information of agem_s0053.g68.t2 in Acropora gemmifera

Genomic Location: sc0000053_pilon:858881...892219
NR annotation: XP_029214003.2, uncharacterized protein LOC114977474 isoform X1 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0053.g68.t2

ATGTCAAAAGCAGAGCACCACACTCTGTTTGCTACTGTGGAGCCCATTTGCCCATTGAATGCTTCTCTTTATCAGAAGTTGGAAGAAGCAGCCAGCAATTGGAATTCTGCGTCTACTGGAATCGGTGCAATTTACGTCGAATATCCGTTGTTTTGGGACCTTTATAGAGACTATTATTTGACATTCAAGTTTGCTAGAGCATTAATGAGGCAAAAGCGAGAGAGCGATAGCGAGTTTATGTCTTTTGTGCACAGTCAGAGGGCATTTCATCGGCCACAGTTAGACGCACTACTGCTAAAACCACCGGCCGAATATGCGATAAATATTTCGCAAATTTTCGTATTTCTGGCGAGTTTGATGTCCCCCCAACGCCGGAGACGATTTAGTAAGTTTCGAAGTCGAATTAGAAAGAGTTTTCGAGCCGCTAGAAGGTGGAAACTTTCATTTAGGGTGCGTAAAAGAAGTTCAGCATTTCGGGTTCAGCATGTTGTTGAGTGTGAACGTATTTTGTCCAATCTGCTGGAGAAGACACCCGAAACCCACCGCGATTATAATGAGCTCAGCAAAGTGGCGGCACGATTTAAACAGATGGTGAAGGGAAGAGAGGAAGAACTACACGAGGCGGAGAATGAGTGCAAACTTTATGGTATTCAAGACAGATTCCCAAGCGATAACCTATACCTCTCAGAAAAGCAAAATTCTCATCGTTCTAAAGCGCCTCCCAGGCGACGCTCAGTTTCGGCGACTGTCATTAAAGCAGCCCTTGGCAACAGAACACACTCGACGAAAAGTTCTACCGTAGATGGGAGCATGCGCATGAAAACAGCAGAACCCAATTTTCCGCTGTCATCAGAGTTGATTCCAGCCAGGATCTTCATCAAGGAAGGACCTGTTGTTCTGCAGTCGTCGTCAATGCCCTCTCAGGACAGGTATCTGGTCCTGTTTGACGATATTCTTTTGGTGGCAAAATTAAGATCGGCAACGTCTTTGAAGCTAAAACACCGCGTCCGTGTCAGTGAAATATGGCTGGCAGGTTGCGTAGACGATGTTTGTGATAGCGTCAGAGCTCAGGACAACTCATTTGTGATTGGCTGGCCTACTACCAACTTTGTCGTCTCTTTCAACACCGCAGAGGAGAAAGAGGCCTGGTATACCGCACTGGCTAAACAGATAAAAGAGAAGAAGGAATTGGAGGACCCAAAAAGCGTCAGCTTAAAAGTTTACAACAGAGACATGGTCTCCTCTGATTCATGGGCCTATTGCTCTGTATCAAACATGGATGATGCCGCTTCCGTGGTCAAGATGTCGCAAGCACTATTCAACATTCAGACTGACGATCCATCCGAGTATCAACTATGGGTCGTTTCTGGTAAAGTGGGAGATGCATATCCACTCATAGGTCACGAGTTTCCTTTCGCTATAAAAATGAACCACATGCGTGAGGCAGCCATGGCAGATGACGACGGTTTGTCTTTTCCACTTGATTATGAGCAGCAGCTGCCGGCCATGGATCCTCTTTCACCAGAAACACAGTGTCAATTTATATTAAAGAGAAACGAGAAAATGACCAACAGAATACCGATAGATGTACAAAGTGCCCCGAGTAGGCAGCGATGGAGAAATCCAATAAGGAGATCGCAGATAATGAACTGGGCGCAAAAGAGATCGGGATCCAGTAAATCCAACACCATTGATGTACAGTCACCTGGAAAGTTGTTTGGATTACCATTAAACCAACTCTGTTCAGACGAAGAGCTTGTACCGAAGGCTGTGATGGAGCTGTTGTTACACCTATTCCGGTATGGTCCTAATACCACTGGAATCTTCCGGAAATCTGCCAATGCAAAGACTGCTAAAGAAGTTAAACTAGAGTTGGATGAAGGTAAAGTCGTTGACTTTGAAGGTATTTCGGAGATCGTAGCTGCTTCTGTAATGAAGGAATTTCTTCGTCGTTTGCCAGACTGCATCTTTGAAAGCGAAAATTACGAAGATCTCGTTGCCACTAACACCCTGCAAGATCGTGAAGAACGAGTGCGACAAATCAAAGGAATTCTGGATGGCATCAACGTTCACAATTACGAACTTTTAAAACGCTTCTTGTGTGTGCTGTATCACATCGCTGATAATGCGGAAATCAACAACATGAACGCTTACAACCTCGCTGTGTGCATATCACCAAGCATGCTTTGGGCACCCAACAGTTCCAATGTTTCCCCGACCGAACAGTCGAACGTTGTTCCCCCGGTCATACAGTTTTTAATTGAGCATTGTGTGGAAATCATGGGTGACAGTGTCAAAACAGTCCTTGGCGACCGCAGCGAAATAGCTGTTAACCACGTGACTAGTGACTCTGAGAGTGGAATCCAAGACTCACGAACTGCTTTGAGCCAGTCGTCTACGGATGATGGAATTGAATCACCGGAACCATTAAGTCCGAAGGGTGAAAGGAACTCTATTCATTGCAGCGACTCCAATTTGTATGTACCGAGCACTCTAGCAGTTAGTCCGCCAAAGAAGAGTGCAAGCTCTCCTAATTCTCCTTGCGATTCAGGAATCCCTTCACCAAGTTCGTCTCCGACTGTCAAAAGACACGTTGAATTTTCAGATCAGCTAAATGCGGCACTTTGTGAACCCGGAAAAAGGAAAGGACAATCAACCGCTTGTCGTCGTAATTCCGAGCCTCTTGGATCCCCACCGGATTCCTTGAAACTACGTCTCAAGGGCAGTCGAAAATTTCCTAACTGCAAAAGACAGCTTAGTAGCACAACAACAAGTGCTGAACTTATTGAACATAAGCAAACGCCAAAGACAACAGCCAGTGGTCGCAAACTCGAGACCGCTGTGCTACGCCGGGCGCACTCTCCTCAAACTGTTCGTTTGTTTCCTGTCACGCAATACCAACGTCTGAATCCTATACCGGTCTCCCAAGGTTCTTTGTCACGCGCTCTTGAAGTTAAACCAGGCCTTTTGCCTCAGGGATCAAGTTGCGACACCCATGAGGGAAATGTGACGTCACAAGTTCTTCCCAGCTCGCCAGTATCAAAACAAACACCAGGGGCTCCTCGTTCTTCATCCCCAAGCCCCGATCAAGTGTTCCAAGCGGTGGATCGCCGCCGGCAGCCTGCGGCACCGTCTTATCAAGAACACATGCAGCGCAGAAGAGAACTTGTTTCGAGACCTGCGTTGTTTGCAGGATCTGAAGGGAAGGAAATGATTGATTCGGAAAGGGAGCAAGAATCTCCTAAAGAAAAAAAAGAATTGGATGAACATGGAGAGCATGTGCAACAAGTACTGTTATCTAGCAAGGCTGCTGCTCTTGGCGAAAGACTGGATTCCGAAAGGAGCGAAACTTCATCGGGTCCCAGATCTCCGTTGTCCCCAACAAGTGAGCCTGAGTATGTTTGGGAACAAGTAGATAATTCGAGTTCGAGTTCAGTGGGAGTAAGCTCAGGATTGCGCAAGCTCGAACATTCACCTTTCGGCCTTAATCTTCATCACAAAAGACAAGCTAGTGAAGGATCATATGAAAAGCCCAACACGGAAAATTCCAAGAAACCTCTCAGTGTTCCTCCTTGTTCTAACACTGGACATTTGCGGGTTTGTCCTACCTCTGTTTCGATTACCATCACAAATTCTGTTGCTCAAAATTCTTCATTGACCCATTTTCCGTCTTCCGAGATATTTCCACACGAAGCTCAAACGAAGACGCACTGGAGCCCCTCCGTCGACACTCGAGTAACTTCGGCTATTCCGATTTCCAACTCGCACGGCGCTCTCAGATTAAGGGCAGGTAGCACCACTTCGTCTTCATCCTCGGTGTCTAGTTTGGACGAACAATCAAGCATTTGCCATGACTCGACGCCTCCCGAATCCAAGACAGACGTGACACAAATACGTGATATCAAAGAACTCCTCTGTCAAACAAAACACGCCAATGGACTGAAAATCAGTCCGCAAACAGCACAAGCCATCGCTAAAGTGCGCACTCCGCATTCGCAAAGTGGTCCCTACCCAGTCCCTTCGCACCACGACATGGAAAAAATACTGTCTACAGAAGAATCGTATGTTTAG

Transcript

agem_s0053.g68.t2

TAATCGCCTTTTCCTGAACTGCCACTTTGTTTCAAGTCCTCGCTGGGCCTTACGAATACAAGTGCCCGTGGATTTATTGAATTTTCAACGACATTTTGAGGCAGATTTTGCTGTACAAGCAGCATCCTTCACAGTCAAACGGTGATTTGAAAGTTGCTCTCGAAGTTGAGGAAGTCAACAGCTCGCCATAGCTAGAATTCGTGCTACAAAATGGCGACGACCAATGCAAGCACGAAAGCAAGACAGAGAAAACATTCGTTTGGCCAGCCACTTGCGTTGTTAAATCGCACGAGATCAATGACCGACCAAACACTGTTGGGAGTATTAAGCATACTCCGTATGGACGAAGGACAAGGGCAGAGTTTTATGGTTAAAGCAATTCTACCCGATGGAAAACCAAGGCTGCTAAGTGCTGAGAGGAACAACACAATTAGGGAACTAGTATCAGGAATTTGCCAGGAGTACAATTTGTCCAACTATCAAGTTCGTACACTTCCTGAAAAGACATTGCTAAACCTTGAGGCCTTGGCAACGACTGTGGAAAATGCAGAAATTGCTATTGAGGATGTGGAAAAAATGCTGTCAAACTTTCAACTTGATAATCTTCACACAATTGAGGATCCAAGGCTTCGTTGTGTTAAAGAGCTGGTTTATGCAGAAGAAATATACAATGAATGTTTGAAGAACCTTTTGGAATTTTATGCTGATCCACTGAGAAGCAAAATGTCAAAAGCAGAGCACCACACTCTGTTTGCTACTGTGGAGCCCATTTGCCCATTGAATGCTTCTCTTTATCAGAAGTTGGAAGAAGCAGCCAGCAATTGGAATTCTGCGTCTACTGGAATCGGTGCAATTTACGTCGAATATCCGTTGTTTTGGGACCTTTATAGAGACTATTATTTGACATTCAAGTTTGCTAGAGCATTAATGAGGCAAAAGCGAGAGAGCGATAGCGAGTTTATGTCTTTTGTGCACAGTCAGAGGGCATTTCATCGGCCACAGTTAGACGCACTACTGCTAAAACCACCGGCCGAATATGCGATAAATATTTCGCAAATTTTCGTATTTCTGGCGAGTTTGATGTCCCCCCAACGCCGGAGACGATTTAGTAAGTTTCGAAGTCGAATTAGAAAGAGTTTTCGAGCCGCTAGAAGGTGGAAACTTTCATTTAGGGTGCGTAAAAGAAGTTCAGCATTTCGGGTTCAGCATGTTGTTGAGTGTGAACGTATTTTGTCCAATCTGCTGGAGAAGACACCCGAAACCCACCGCGATTATAATGAGCTCAGCAAAGTGGCGGCACGATTTAAACAGATGGTGAAGGGAAGAGAGGAAGAACTACACGAGGCGGAGAATGAGTGCAAACTTTATGGTATTCAAGACAGATTCCCAAGCGATAACCTATACCTCTCAGAAAAGCAAAATTCTCATCGTTCTAAAGCGCCTCCCAGGCGACGCTCAGTTTCGGCGACTGTCATTAAAGCAGCCCTTGGCAACAGAACACACTCGACGAAAAGTTCTACCGTAGATGGGAGCATGCGCATGAAAACAGCAGAACCCAATTTTCCGCTGTCATCAGAGTTGATTCCAGCCAGGATCTTCATCAAGGAAGGACCTGTTGTTCTGCAGTCGTCGTCAATGCCCTCTCAGGACAGGTATCTGGTCCTGTTTGACGATATTCTTTTGGTGGCAAAATTAAGATCGGCAACGTCTTTGAAGCTAAAACACCGCGTCCGTGTCAGTGAAATATGGCTGGCAGGTTGCGTAGACGATGTTTGTGATAGCGTCAGAGCTCAGGACAACTCATTTGTGATTGGCTGGCCTACTACCAACTTTGTCGTCTCTTTCAACACCGCAGAGGAGAAAGAGGCCTGGTATACCGCACTGGCTAAACAGATAAAAGAGAAGAAGGAATTGGAGGACCCAAAAAGCGTCAGCTTAAAAGTTTACAACAGAGACATGGTCTCCTCTGATTCATGGGCCTATTGCTCTGTATCAAACATGGATGATGCCGCTTCCGTGGTCAAGATGTCGCAAGCACTATTCAACATTCAGACTGACGATCCATCCGAGTATCAACTATGGGTCGTTTCTGGTAAAGTGGGAGATGCATATCCACTCATAGGTCACGAGTTTCCTTTCGCTATAAAAATGAACCACATGCGTGAGGCAGCCATGGCAGATGACGACGGTTTGTCTTTTCCACTTGATTATGAGCAGCAGCTGCCGGCCATGGATCCTCTTTCACCAGAAACACAGTGTCAATTTATATTAAAGAGAAACGAGAAAATGACCAACAGAATACCGATAGATGTACAAAGTGCCCCGAGTAGGCAGCGATGGAGAAATCCAATAAGGAGATCGCAGATAATGAACTGGGCGCAAAAGAGATCGGGATCCAGTAAATCCAACACCATTGATGTACAGTCACCTGGAAAGTTGTTTGGATTACCATTAAACCAACTCTGTTCAGACGAAGAGCTTGTACCGAAGGCTGTGATGGAGCTGTTGTTACACCTATTCCGGTATGGTCCTAATACCACTGGAATCTTCCGGAAATCTGCCAATGCAAAGACTGCTAAAGAAGTTAAACTAGAGTTGGATGAAGGTAAAGTCGTTGACTTTGAAGGTATTTCGGAGATCGTAGCTGCTTCTGTAATGAAGGAATTTCTTCGTCGTTTGCCAGACTGCATCTTTGAAAGCGAAAATTACGAAGATCTCGTTGCCACTAACACCCTGCAAGATCGTGAAGAACGAGTGCGACAAATCAAAGGAATTCTGGATGGCATCAACGTTCACAATTACGAACTTTTAAAACGCTTCTTGTGTGTGCTGTATCACATCGCTGATAATGCGGAAATCAACAACATGAACGCTTACAACCTCGCTGTGTGCATATCACCAAGCATGCTTTGGGCACCCAACAGTTCCAATGTTTCCCCGACCGAACAGTCGAACGTTGTTCCCCCGGTCATACAGTTTTTAATTGAGCATTGTGTGGAAATCATGGGTGACAGTGTCAAAACAGTCCTTGGCGACCGCAGCGAAATAGCTGTTAACCACGTGACTAGTGACTCTGAGAGTGGAATCCAAGACTCACGAACTGCTTTGAGCCAGTCGTCTACGGATGATGGAATTGAATCACCGGAACCATTAAGTCCGAAGGGTGAAAGGAACTCTATTCATTGCAGCGACTCCAATTTGTATGTACCGAGCACTCTAGCAGTTAGTCCGCCAAAGAAGAGTGCAAGCTCTCCTAATTCTCCTTGCGATTCAGGAATCCCTTCACCAAGTTCGTCTCCGACTGTCAAAAGACACGTTGAATTTTCAGATCAGCTAAATGCGGCACTTTGTGAACCCGGAAAAAGGAAAGGACAATCAACCGCTTGTCGTCGTAATTCCGAGCCTCTTGGATCCCCACCGGATTCCTTGAAACTACGTCTCAAGGGCAGTCGAAAATTTCCTAACTGCAAAAGACAGCTTAGTAGCACAACAACAAGTGCTGAACTTATTGAACATAAGCAAACGCCAAAGACAACAGCCAGTGGTCGCAAACTCGAGACCGCTGTGCTACGCCGGGCGCACTCTCCTCAAACTGTTCGTTTGTTTCCTGTCACGCAATACCAACGTCTGAATCCTATACCGGTCTCCCAAGGTTCTTTGTCACGCGCTCTTGAAGTTAAACCAGGCCTTTTGCCTCAGGGATCAAGTTGCGACACCCATGAGGGAAATGTGACGTCACAAGTTCTTCCCAGCTCGCCAGTATCAAAACAAACACCAGGGGCTCCTCGTTCTTCATCCCCAAGCCCCGATCAAGTGTTCCAAGCGGTGGATCGCCGCCGGCAGCCTGCGGCACCGTCTTATCAAGAACACATGCAGCGCAGAAGAGAACTTGTTTCGAGACCTGCGTTGTTTGCAGGATCTGAAGGGAAGGAAATGATTGATTCGGAAAGGGAGCAAGAATCTCCTAAAGAAAAAAAAGAATTGGATGAACATGGAGAGCATGTGCAACAAGTACTGTTATCTAGCAAGGCTGCTGCTCTTGGCGAAAGACTGGATTCCGAAAGGAGCGAAACTTCATCGGGTCCCAGATCTCCGTTGTCCCCAACAAGTGAGCCTGAGTATGTTTGGGAACAAGTAGATAATTCGAGTTCGAGTTCAGTGGGAGTAAGCTCAGGATTGCGCAAGCTCGAACATTCACCTTTCGGCCTTAATCTTCATCACAAAAGACAAGCTAGTGAAGGATCATATGAAAAGCCCAACACGGAAAATTCCAAGAAACCTCTCAGTGTTCCTCCTTGTTCTAACACTGGACATTTGCGGGTTTGTCCTACCTCTGTTTCGATTACCATCACAAATTCTGTTGCTCAAAATTCTTCATTGACCCATTTTCCGTCTTCCGAGATATTTCCACACGAAGCTCAAACGAAGACGCACTGGAGCCCCTCCGTCGACACTCGAGTAACTTCGGCTATTCCGATTTCCAACTCGCACGGCGCTCTCAGATTAAGGGCAGGTAGCACCACTTCGTCTTCATCCTCGGTGTCTAGTTTGGACGAACAATCAAGCATTTGCCATGACTCGACGCCTCCCGAATCCAAGACAGACGTGACACAAATACGTGATATCAAAGAACTCCTCTGTCAAACAAAACACGCCAATGGACTGAAAATCAGTCCGCAAACAGCACAAGCCATCGCTAAAGTGCGCACTCCGCATTCGCAAAGTGGTCCCTACCCAGTCCCTTCGCACCACGACATGGAAAAAATACTGTCTACAGAAGAATCGTATGTTTAGCCGTAATAATTTGATCGACGGCGTGCTGCTAAGCCATCGTTAAGACTGTTTATTATGATTATTCTTTTAACATGTAAAATAAAGATGAGCACAGAAAAACTTAAAAAGTGTCAAGCTCTTATATTATACTTTCATCAGTCCTCTTTGTCTTTTTTACAGGAAACAATTTTACTCGTGCCGCACCAAACGATGCGAACGACTAAACGTGGTTCGTTTATTCGAGAATTTCCCACGTACCTCACTTCCGGTTCGCAGTCTTGTTGAAGATGCCAAGCATTAGCGTAATCGAGTAAACCTGACTTTCGGCGGATGACCACGTAGTCTGCATTTTCAGACTCAAGAAGCACCCCATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6REY9	Rho GTPase-activating protein 20 OS=Rattus norvegicus OX=10116 GN=Arhgap20 PE=1 SV=2
Q6IFT4	Rho GTPase-activating protein 20 OS=Mus musculus OX=10090 GN=Arhgap20 PE=1 SV=1
Q9P2F6	Rho GTPase-activating protein 20 OS=Homo sapiens OX=9606 GN=ARHGAP20 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR047887 all species →	Domain	ARHGAP20, PH domain	Interproscan
IPR047888 all species →	Domain	ARHGAP20, Ras-associating domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23179 all species →	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20641	ARHGAP20; Rho GTPase-activating protein 20	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.