Gene detail

Detailed information of agem_s0056.g5.t1 in Acropora gemmifera

Genomic Location: sc0000056_pilon:145536...161206
NR annotation: XP_044163251.1, E3 ubiquitin-protein ligase DZIP3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0056.g5.t1

AAAAGATTTCTTAAAAATATGCATTTTGACATTTTTCTTAAAGTTTTCAAGTCTAGAGTTTTTCTTCAGTGAATCTGGAAGTGCATTCCAAGTGTCAGGCCAGTGTATCTAAATGTCCTTGCTCCAAACGTACATAGTTCTCTTGTCCTTTGGGACGAGAAGGTTGTTCTTTCCATCTGCTCTTGTGCCCCAGTCTGGTCTCTTGCAGAGTAATTCTCTGAGaaaattcaagaatggcatctagtctaccaGactttgcttcaacacaagagaacactaaCtatgctcgtctgtgtcgtcttctggttgatgttggatgtacagtccttcgtgatacctttgacagtatacaccctccaGccaatttacatgtggttttgtcaagtccttcagtgttctccacattacagtccttaagaaagaagaacgttttgtatacgatgcagtggggaaagctgttcccagctgttgcttcaagggtggcatcagccaactttgatgtcacacttctaatggtacttctgagaaatatatgtggtttgagtccacctgttagtactggcaactgggacaagcttccccctgactctgataacagtactgaagcaaatatagtgagaatcaagtggtacagaaatgatgtctatggccacgccaccaaggcctcagttgatgatgcaacattcaatgtactgtggcagaaaatcagcagtgctgtcctagcacttggatctggttatggagccgtcatcagcagattgaaaactgagtgcatggatcctgCTGCTGAGGCTCACTATGAAAAATTACTGAGTGACTGGAAGAAAGATGATGATATCTCTAAGGAAATGCATGAGAGAACTCATGAGGCACTTGGAGAGATCAAAGAAAACCAACAGAAAACTAACAATGAGCTTGGAGAGATGAAAGaaaatcaagagagaaccaacattgagcttggagaagtgaaagaaaatcaagagagaaccaacattgagcttggagaagtgaaagTTACAGGTCTGGTTCTCCATGATTGTGACATTGATGGCGCAAATGctgttgaactggctgggcaattgaaagaaaattcaacgctgacatcgctgaccttgtctaataatagaattggaaatgacggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcaaaatactcaaataggctacgttggcgctgatgcactggctaaaggattgaaagaaaattcaaccctgacatcgctggacttgcgttctaatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcgttctaatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcgtaataatcgattaaacaacgttggcgctcatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctggacttgtctaataatataattgggaatgacggtgctgatgcactggctaaaggattgaaagaaaattcaatgctgacatcgctgaacttgcgttttaatgtaataggcgcctttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctggacttgtttggtaatagaattggcgaagttgccgctgatgcactggctaaaggattgaaagaaaattcatcgctggacttgcctaataatagaattggaaatgacggtgctgatgcactggctaaaggattgaaagaaaattcaacgttgacatcggtgagagttttccgctaataatattggcgacgttgccgccgattcactggctgaaagattgaaagaaaatttaaccactgtgtctgatgacagtctgatgagcgagtatccttcgagacaaggttcaaccaactgtactaagatattgtatgatcattaaaacaataatggcttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18738	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR053040	Family	Leucine-rich repeat-containing protein 71	Interproscan
IPR041249	Domain	DZIP3-like HEPN domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46984	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan