Detailed information of agem_s0059.g63.t2 in Acropora gemmifera

Genomic Location: sc0000059_pilon:1026040...1040213
NR annotation: XP_015778389.1, PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13C-like [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BX70Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2
Q709C8Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000772 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16910
all species →		VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031642
all species →		DomainVPS13, middle RBG modulesInterproscan
IPR026847
all species →		FamilyVacuolar protein sorting-associated protein 13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006623
all species →		Biological Processprotein targeting to vacuoleInterproscan
GO:0019898
all species →		Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →		Biological Processprotein retention in Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0059.g63.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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