Gene detail

Detailed information of agem_s0067.g11.t1 in Acropora gemmifera

Genomic Location: sc0000067_pilon:100512...107255
NR annotation: XP_029203071.1, ras-related protein Rab-13-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0067.g11.t1

TTTTATTTCATTTCCATGGTGGAAGTTTATTTATAGCATTTTTTGGTCATGAATATTTCATTGTGAGTTGCCTAGCATACAGCAAACTTGCCGACGGAGTTCTGTTCCGCTAAATGGTTGATTGCCCGTGTAATAATTATTTAACACAGTAATGGCGAAAAGTTACGATCACTTGTTTAAGATTTTACTCATCGGCGATTCTGGCGTCGGGAAGACATGCATTCTCTGTAGATTCGCAAACAACGAATTTAACAGATCACATATATCAACGATTGGAATCGATTTTAAAATGAAGACAATCGTTGTCGAAGGAAAAAGGATAAGGGTTCAGATGTGGGACACAGCTGGACAAGAAAGATATGAAACCATCACAACACAATACTACAGACGAGCACAAGGAATAATTTTGGTTTATGACATCACAAGGGAGGAAACATTCCGAAACATTCAAAAATGGCTCAGATATGTTGATGAGCATGCAAACAACAATGTTCAGAGATTACTGCTAGCAAATAAATGCGATGCTGAAGATGAAAGAACAGTTTGGAAAGACCAAGGCTCAAGGTTAGCAGCAGAGAAAAATATCAAATTTTTTGAAACAAGTGCCCAATCAAATATTAATATAGATGAGGCCTTTGCAGAAATATGTCAACAAATTTTGCATTCAATGAATGACACAAATAATCAGAATGGAAACTCTAATGTGCTACCAGCCAATGGTAAAGTTGGATCGGGGCCAATTCTCCTGGACACAAAAAATGAAGTGTTGCCACGCAGCTCCTGCTGCTATTAGTAAATTCGTTTGTGATAAAGCATTCAACAAGAGTAGCATAAATTGTATAGTTTTTAGAGAAATTAGACCTATTTGATTTATGGGATTATAAAATGATTACTGTAAAGGTACAGCTTCAAAAGTTTCCACATTTGATTGGCTTGAAAAGCACAAAACATAAATAATTACTAAGGTTGGCTTGGTTCCCCAAATAGATGATTCCTCTAAGTTCTTTTTCTGTACATTGCCTCTGCACTAAAGTTACATGAAGATCACTGTTAAAACAGTTAATATTCCGGAATATCATTTTTGGTTTTGTCCTGAACTCTCCCCTTAATTTGCTTTCTTTCAAGAGAATAATAATAATATTCTAAGTCTTTGTTTGGTAAGCAGAGCTAAAACTAACACCATCAATAGGCCTGGAGTGACTTTTGGATTATTTCTCCCAACATTTTCTGCCTTTTTGGTTGGCTCACTAAAATGCCAAGGGAATTTTCAAATTATACTGTTAACATTGAAGAAAATGTGAGGTTACTGCAAGACTGCATATTTTAAAGGCATAGTTCCTGTGCTAAGTTTGAACTATGATCTCATGTGTTTGTGAGTACAAACATAACACAGAAAATTAGTTCACTCAATGGACTGCATACTTTCCTAAGGGCTTTGATAGTGTAACTTTAATGTTTGCAACAGAAATTTTGAAAAGGTTTGAATAAGAGACCAGAAGTGGCAACAAACACTGCAGTAAATTTGTATAAAATGTATGTAAGAGTTTGTAACTCCGAAAAAAGCAACGCAAGCAATTCAAGTAATCCtgtagctctttgagactatagttaagtactgtatattttcaccagtccctacaacctgtagctcctattgttattagggttataagtattgtttgagttgtgtcatcaataatgttttgttccccaaacacagattgtatttTCACAAGATCAtgttttcaccagtccttacaacctgtagcttatcagggttaaaagtattgtttgagttgtgttatcaattgaaggggtgtgtagaataaggccttaagtgacttttgatgcaatgtcaaattctcttagtcattcacaactgaatacaaggacatttggaaggagaatctggtaatttatcagaagtcacttaaggcttttctccaggtacccctacaattgttTTGTTCTCCAATCAGATTGTGTCTGAGGTGGTATAGGATCTCTTGCAATACTTGCAAAAAAAACATTGTCTATGCATACGAGAAATGCTGTCATTCTAAAAGAAGCAAATTGTTGTTTAAATACAAATTCTTTTGACTACAGATTATCAAATTAATATAATATCTTTAGCTGTTATTTAAGATAACATTTTTTCAGAAAATCAATAATAGATTTGTTAATAAAAATGTACATTTAGT

Protein

Uniprot

Uniprot term	Description
P51153	Ras-related protein Rab-13 OS=Homo sapiens OX=9606 GN=RAB13 PE=1 SV=1
P35286	Ras-related protein Rab-13 OS=Rattus norvegicus OX=10116 GN=Rab13 PE=1 SV=2
Q9DD03	Ras-related protein Rab-13 OS=Mus musculus OX=10090 GN=Rab13 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050305	Family	Small GTPase superfamily, Rab	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980	LD44762P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07908	RAB15; Ras-related protein Rab-15	-	GTP-binding proteins	ko04031	deepkoala