Gene detail

Detailed information of agem_s0068.g75.t1 in Acropora gemmifera

Genomic Location: sc0000068_pilon:1259069...1268397
NR annotation: XP_029195930.1, pre-mRNA-splicing factor 38A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0068.g75.t1

CCCCATGCTCTCTCGCTTCCCACTTGCATTTCTTCCAAGATGGCGAACCGAACGGTGTCTGATGCGAAGACGGTAAAAGGAACAAATCCTCAATACCTGGTGGAAAAAATCATTCGATCACGCATTTACGAGAATAAATACTGGAAAGAGCAATGCTTTGCGCTATCAGCGGAACTTTTGGTGGACAAGGCCATGGAATTGGATCACGTTGGAGGCACATTTGGAGGAAACATCAAGCCTACACCTTTCCTGTGTTTGGTGTTGAAAATGCTACAAATTCAACCTGAAAAGGAGATCGTTGTTGAGTTCATCAAAAACGAAGATTACAAATATGTACGGGCTCTTGGAGCAATCTATATGAGACTTGTAGGGACGTCATTGGATTGTTACAACTACCTGGAACCTCTTTACAACGACTACAGGAAGATCCGAAGAAAGAATAAGATGGGCCAGATGGAACTTGGCCACATGGATGAGTTCATTGATGAGCTTCTGAGGGAAGAAAGAGCCTGCGATGTCATCTTGCCTCGTATTCAGAAGCGCCAAGTGCTTGAAAACAGTAACCAATTGGAGCCAAGGCGGAGTCTTCTCGACGATGATTTAGAGGAAATGGAATCCGATTCAGAAGAGGAAGAAGAAAGACAGTCGCCTTCTCGTCGACGCAGCCGAAGTCGCAGTCCTTCACCGAAACGGGCACATCGTGATTACGACAAATCTAGAAAACGCAGCCGATCTCCCGGAAATCGAAGACGCAGTCGCTCAAGATCGCCTCGCCGTCGGAGACGCAGCGCTTCTCCTCATAAAAGGCGTGGACACAGAAGCCGAAGTCGTTCGCCATACCGTCGTCGTTCCAGGTCGCGATCTCGGTCGCGTTCGCCACATCGTCGGCGTCACCGATCAAAGTCGCGATCGAAGTCTCCCGAAAAGTCCTCGAAGAAGTCGAAGAAATCCGATAAGCCCGACAAGAAGAAAGAGAGCGAGAGTACAGGGATGAGTAAGGATGAGCTTGAAGTCAAAGAAGCCAATGAACTCAGAGCGAAGCTTGGTTTGAAGCCGTTAAAACCCTAAGAAATCACTTCTTTCTCGTTACAAGTGTTGGGTTTTTATTTCAATACCTTCCAATTCGTTGTCGATAACTAAAGTTTAATCACACCTGTTAACATCGGTAACCTAGGAGGGAGGGGTGGGCGGAgtagttgttgtttttttgttattgctgttgtCTTTTTACAGTTCTTTAGCCCCTCCCTCTTTGTTTATGTAAAATTACCCGAAATGAGTGCAGTCAAATTAGCTGCCTCTCTTTGACAAGCAAGAAAATGGAGCGATTCTTGTATTTTGAGGCGGATATCTCATGACCGAGTTATTTGTCGATTTGTTTGTCCCCAGACTGCACCGTTTTCATTTCTTTTTCTGGCGTGTTTTACGCTGCTTTCATCTTTCATCTGATGAACTGGCTGGAGTTAATTGCAGACACAAAGCTATTTAGTCGGCGGAAGCTGAGTGGATCCAGTCCCTTGTGGGAGTTGAAACGCAAATTAATCCATTCATCTCCTTCGCGGAGcaaccttgttcccaggacctctcccttggcttttgagCGACGAAAAACGATGGAGAGGCCCTGGAAACGAGGTTGTTTGTCGATTCACTTTTATCTCGACACGCAATCTCCCTTCTTTTTGTGTTGGTGAGATTGCGTGACGAGCATCAAAGGCTTCAAAGGAATTTATCTGTTTGTCAGAATGATTACTTGATGTGACAAAATCATCGAATCCTTGTGCAACTGCGGCCCTTGTCCTTTGCTCTCAGTTGTCTTTATTCTTGCTATGTCTATGTAGAAAGGAAAATGAAACGTAAAACGAGATTTGAATAAGAGGAGAAGTCAAAACTAGCATTGAGTTCTAGTACTTCACACAAAAAGTAGCATTGTTTCCCTGTTCCTTGACTACTCGGCCCGTCGGAATGCCTAGAATTCCCACTTCCACGCCCAGGAAGTACAAGCTTGCAGTGCCGGCGTAAGGATTTTGGCC

Protein

Uniprot

Uniprot term	Description
Q0P5I6	Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1
Q8NAV1	Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1
Q8HXH6	Pre-mRNA-splicing factor 38A OS=Macaca fascicularis OX=9541 GN=PRPF38A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03371	PRP38	PRP38 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005037	Family	Pre-mRNA-splicing factor 38	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23142	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12849	PRPF38A; pre-mRNA-splicing factor 38A	-	Spliceosome	ko03041	deepkoala