Detailed information of agem_s0069.g48.t2 in Acropora gemmifera

Genomic Location: sc0000069_pilon:857256...872553
NR annotation: XP_044180203.1, sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X3 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4LDE5Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SVEP1 PE=1 SV=3
A2AVA0Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Svep1 PE=1 SV=1
Q96PZ7CUB and sushi domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CSMD1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000334 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR050350
all species →		FamilyComplement & Cell Adhesion RegulatorsInterproscan
IPR000421
all species →		DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19325
all species →		COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0069.g48.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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