Detailed information of agem_s0075.g21.t3 in Acropora gemmifera

Genomic Location: sc0000075_pilon:430529...462295
NR annotation: XP_029193178.2, LOW QUALITY PROTEIN: cartilage oligomeric matrix protein-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9Z1T2Thrombospondin-4 OS=Mus musculus OX=10090 GN=Thbs4 PE=1 SV=1
P35443Thrombospondin-4 OS=Homo sapiens OX=9606 GN=THBS4 PE=1 SV=2
P49744Thrombospondin-4 OS=Rattus norvegicus OX=10116 GN=Thbs4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF11598COMPCartilage oligomeric matrix proteinFamilyInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR024665DomainThrombospondin/cartilage oligomeric matrix protein, coiled-coil domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04659THBS2S; thrombospondin 2/3/4/5-Glycosaminoglycan binding proteinsko00536deepkoala

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