Detailed information of agem_s0075.g23.t2 in Acropora gemmifera

Genomic Location: sc0000075_pilon:511860...535045
NR annotation: XP_015767230.1, PREDICTED: cartilage oligomeric matrix protein-like isoform X3 [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q06441Thrombospondin-4 OS=Xenopus laevis OX=8355 GN=thbs4 PE=2 SV=1
Q9Z1T2Thrombospondin-4 OS=Mus musculus OX=10090 GN=Thbs4 PE=1 SV=1
P49746Thrombospondin-3 OS=Homo sapiens OX=9606 GN=THBS3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000875 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF02412
all species →		TSP_3Thrombospondin type 3 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028974
all species →		Homologous_superfamilyTSP type-3 repeatInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR017897
all species →		RepeatThrombospondin, type 3 repeatInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR048287
all species →		DomainThrombospondin-like, N-terminal domainInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR003367
all species →		RepeatThrombospondin, type 3-like repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199
all species →		THROMBOSPONDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0075.g23.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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