Gene detail

Detailed information of agem_s0076.g77.t1 in Acropora gemmifera

Genomic Location: sc0000076_pilon:1067903...1084889
NR annotation: XP_029213957.2, lateral signaling target protein 2 homolog isoform X1 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0076.g77.t1

GCAATCGGTGCAATTTTTCCGGAGGGATGGAAAGCTCTTTTAGCTCCAACGCGAGTGAAGGCATTGACTCAAGTTTGACAAGGAAATGTTGGAGCTGTAACAAACCTTACAAGTCCTGTAATTGCAAGAATTGCTCGAAATGTGGCACAGACTTTCAGAAGTACTGGGGAACTAACCTAGTTAAAGGAAGATCCCACTGCCGCACTTGTTCTTTAGCAGTTTGTGGTAACTGTCATGTGGTAGTCAACAAGGCTATTAAGGTGTGTACAAGATGTCTCGTGAAACAAAAGGAGGATGAATTGAGTACACAGAAAGCTCTTTCAGCTATTGGAGAGGCAAAGATGGGACGAGCCAATTCTACATCCTCGTCCATAACTGATTCATTTGTGATGGCATCTCCAGTCTTGTATATGACCTTGGCGCAAAAGAAGGAATCACTTTTTGAAGCTGCAAAGTCAGGTGATCACTACTCCATGGTTGCTCTACTCAATAATAATGTGGATGTAAATATAAAAGATGAAAACAAAAATACTCCGTTGTTTTTTGCTGCTGAAGGTGGCCATCTCCCTTGTCTGGCTCTTTTAATGGAAAGAAATGCAGATGTGACAACTGTTAACAATAAATCTTGGACTTGCCTTCATGCACTAGCTTGGAAAGGGTGCAGTGACAGTCACGTGGAGTGTGCTGAGCTCCTTGTACAGATGGGAGTGGCTGTTTTTGCACTCACTGACACATTAGAGACAGCTGCTGATCTTGCTGCTCGCTCTGGTGGTAAACAAGAATTGGTTCAGCTGCTGAGAGCTATAGAAGTTGAGGTAGCAATTCAAAATTTGCAAGAGAAACTTCAAAACCCATCAGGTTGGTCTGGCAAAGATGCAGTGTTCAAACAATATGTGACCGCAGTTGTCAGGCACGTCACAGAAACAGCACCACCCAACAGCCCAAAATGGATGGTAAAAGAATGTCAACAAAACGTTGTGTCATCATCAAGGATGCCAGAAGTGCTAAAAGTGGAAGAGGACACCAAATATCTTGATTTGAGCCTTAGGAAGCACAAGTCGTGTGAAGAACTTAGAGCTGAGGTACCTCTTTTGGATGGTACCAGTTCTTCATCAGCCGGCACTCAAGCAGCACATGTGGAAGCTATCATCAGACCAGACTTACTGCCATCTGTCCCAGTAAACCTTTCTAAACTTGAGGAGCAACTGCTTAAGTGTCAAGCAGAGAAAGACGACCTGGAGCGGCAATGCAAAAAGCTTATGCAATCAATCGCCAGCGCTGCTCAGGCGCACGATAAAGAGTTGACGAAATTGCAACAGGAATTGGACATCGTAAGAGAGCAGAAGGACATCGCCATTAAACGGGCCAATGCTCGGCTTGAACAAGCAGAGAAAGACCGAGTCGAGGTATTGCATTTGCAGAACGCTTTTCGGTTATCGTGGGTCCCGGATGAGCTTGTCATCTACTGTTCTAATACCAAATGTCGAGCTCCTTTCACGCAAACAAGAAGACGCCACCACTGCCGCTGCTGTGGGCGCGTATTCTGTCATAACTGCACAGGCCAGTCGGCACCAATTCCAGCATTTCGATACGATCAGCCGGTACGGGTGTGTAACCCATGTTTTGCTTTGTTGGACGACATGTTCTGTGATGAATCAGTGAAAGGCCTCACGTGACATCAACCTCTTAACTGTTACGATTTGTAAGGAATGGATTGCTCTACTCAACTCACTTCAACCCATAAGTGCACTCTGCTGTCTGCAACTTTTTCAGTCAGGGAGGCTTTGAAGGCAGTATAACTGCCTTACAACTGGTGATGAGTGGATTCTTAAGACTCAGTTGCTTGTTTATTGGTTTTAAAGTTGAAAGTGACTAACCAGTGCTAGGCTCGGTTCATGAACCGTAATACTCTTACAAAGCGATACAATGCAAAAGGTTCGCTTTTCAGCAGTTATTTTAAAGGCTGGTTGGCTTTCAGATAAGTGTTTTGTGTGTGTTACTATGAACTATTTGAAAGAAAAAAATAATAAATTCACTTGCGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8XJZ8	Lateral signaling target protein 2 OS=Caenorhabditis briggsae OX=6238 GN=lst-2 PE=3 SV=1
Q9TZD0	Lateral signaling target protein 2 OS=Caenorhabditis elegans OX=6239 GN=lst-2 PE=2 SV=2
Q96T51	RUN and FYVE domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RUFY1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002311 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051118 all species →	Family	Lateral signaling target protein 2	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46465 all species →	LATERAL SIGNALING TARGET PROTEIN 2 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0076.g77.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.