Gene detail

Detailed information of agem_s0082.g42.t2 in Acropora gemmifera

Genomic Location: sc0000082_pilon:881945...887272
NR annotation: XP_015760791.1, PREDICTED: POU domain, class 4, transcription factor 3-like isoform X2 [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0082.g42.t2

GTTCACAAAGAAAACGCAAGAGACGAAACGCAAATTTTTGAATATGTGGTGGAAATTCACGACGATTGCTTTCAACAAAATTCATAAAATGGCGGAAAATTGTGTCCTTGAGTCAAGTCCTTTACATCAAAGGCACCGGCTTCGGAATGCGGACTCAGTGATATCGGAGAGGGGCTAGATGAATGAGCCAAGCTGGATACCCTCGATTCGTGGATCTACTCACTCGCTGTCTTTCCCGTCAAGATCTAACAACCTGATTCCTCCAAGTGTGTTTGATGGCTTTGACGATTCGCACTTACTCTCTACGTCGCAGCTCGAGCCGATGCCGAAATATCTCTCGACGAAGCCAAACAAGCCTTCAGGTTTCGCGAGCTTACATAGTTACCATTCAACACACGGCCACGATACGAACACATACGATGCCCACGACATTCTGGATCAGATTTCAGCCTCACTACAGCCAACAGTTAGCGAGTCAGCGTTTGACAAACCGTTTGAAACGCCATCGCCGGTCACCGCCACACCTGTGCACTCTTTACACTCGGCTATCCATTCCGCCATAAGCGTGGCAGCAAATAGCGACGATGTAATGAATCCGCGAGAGCTGGAATGGTTTGCAGAACGCTTCAAACAAAGAAGAATCAAGCTTGGGGTTACTCAGGCAGACGTAGGTGCTGCGCTGGCGCATCTGAAAATCCCTGGTGTGGGCTCGTTGAGCCAGTCAACAATTTGCAGGTTTGAATCTCTAACACTGAGTCACAATAATATGATGGCGTTAAAACCCGTGTTGACAGCGTGGCTAGAGGAAGCGGAGAAAGCATATAAATGTAAGAATACAACAAGCCAATTCCTTCCTAATTCGGATAAAAAGAGGAAGCGAACATCGATTGGAGCGGCAGAGAAACGTTCTCTAGAAGCTTACTTCGCCATGAATCCAAGACCTTCAAGCGACAAAATTGCGTCAATTGCCGAAAAACTAGACCTCTCGAAAAATGTCGTACGTGTTTGGTTTTGCAACCAGCGGCAAAAGAAAAAAAGAATGAAATTCTCTGTCCACTGACTGCAGTCGAAGTAATAGTAAATGATCTTCTGCCAGCGAAATATCTCCACGGTAAGGAACAGCGCGCCGCCGATGGATGCATACCATGGCGCGTGAACGATAGATTTGGACTAAATTACACACAGCGTATTTATTATGCTTTGAGACTGAAAATTATTATCATTATAACTTAGTAAAGGTAGCAAATCCTAAATTTTATTGCTTTTACTTTTAAAAACTTTGCTAAGATGTGATAGTTCGCTTTTGCATATTGAAAGGAGTACACAACTCGCAATTGAGTAACAGTCACTTCTTTGAAAAGCGAAGCCTAGATGCAAACAAAGATGGAAACTTATCTAACTGCCCGCAGGTAATAAAACATTTCTTGTAGTCCCTATAGGCTTAACAAGAAGGGAAAATTCCAAAGCACACATCACTTCCGCTAGTAGTAATATTATTCATCGTTCATTTTGCCACATTTCATGTAGGTTGCGATTAAAATTTCGATTTTACGACCTAAGGTCTAATGTTAATAAGTCTCGAGATGATTTGGCCTTACACCTGTTCCCTTTTGCTAAAAATCAATTTCCCCATTTATGAAAAAGTTGAATGTATTACTTGCAATATATGTAAATTTGGAGGTTCTTTGTGAAGAAAAGCCGTTAAGATGTTATTAGTTTAGGATAGAATGGAAGAGACGACATAGAATCGTTAAATTAAATAAGACAAATACGAAAACGTCGATCTCTTTTCAAACGGTTTTTCTTCAAATAGAACCACCCAACAGATATCAGGTTTGGCTTTGTTCGCTTGCGCAGTCCAATAAGAGCGATCCCTATAATTGCCAACAAAAGAGTTCAGTAAAGAACTTTTACTGCTAGACAGAATTTAATGGCATAGGCCCGGAGAGTATATGTATTTAAATATATATTTTGAAATTTTATACTTTGAGGAAACTTTTATGAATTAACATTTATGATGTATATTTGTTGACGCTGTACAAAATTTTACCGCTTGCACCATAATTGCCATAATTTAAGTCATTTTCTGAAATTCTATTTCATTTTTAGCTCACTGGTGTCATTGCGGAAATGTCTTCGATGTTTAAGTTATTCAAAAGGAGCCTCAAATTAAAACCAGTTTTCTCAAGTTGCAAATTTGTAATGAATTGAGCTTAAATTGTCGAGAAGTTTTAATAAACTCAAGTTCGAGGAATAAGCGAGAGAAGCGCGTTCCTATTTGTTTAGCTTTGCGCGCGCTGGTATTGCTGACAGACCACCCGTCTTCACAATTTCCTTACGTGGTACAGTGTGGCGAAAGTTTCTTGATTAACAAGGGCTTTTTGTTTTCTCCATCTCATTGTATAATGACAGTGCTTTGAAGACCAGGTATCGGTCAAAAAGAAAAAATTGGGATCATATCAGTGAAATAAAAAGATTTATTCTACTTTAATGCAAAATTCTTAAGTTATTGGCTTCTGATAATAACATAATTTCACAGAATGAAAAAATAAATTAAAAGTAAAGTCATTTTGGAAATTGAAGGTCGTGTCTTGTGCAAAACATATCGCGAAATGCGCTCGAAGTCATTAATCTGTAGAATTAAAGGGAGCTAACGCCGTATAGGTAGAATGAGCCAGAGCAATCGATCTCCTTCGTGAATATAATTTTGTTTGCTTTAAACCCAGCCTTTCGCAAGCACATGAAAATTGCGAAAGCGGCGATCGATGAGATTTTGTGATGTACAAGGAATAGGGTTTGGTTTGAGAGTAATTATTTTATTTACAGCAGGTGTAAAAATGAAGATGTTGCAGTCTCCTGCTAGGCTTTTTCATTTTCGGATTTCCCATCATACTTGAAAGAAGATTTCACTGAGTAAGTTGTATTTGCAAGATTAAACCACAGTTAAGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15319	POU domain, class 4, transcription factor 3 OS=Homo sapiens OX=9606 GN=POU4F3 PE=1 SV=1
Q63955	POU domain, class 4, transcription factor 3 OS=Mus musculus OX=10090 GN=Pou4f3 PE=1 SV=2
D3ZTL1	POU domain, class 4, transcription factor 3 OS=Rattus norvegicus OX=10116 GN=Pou4f3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006834 (this species only)
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09366	POU4F, BRN3; POU domain transcription factor, class 4	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.