Detailed information of agem_s0086.g3.t1 in Acropora gemmifera

Genomic Location: sc0000086_pilon:77116...111574
NR annotation: XP_015772999.1, PREDICTED: rho guanine nucleotide exchange factor 5-like isoform X1 [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5BKC9Ephexin-1 OS=Rattus norvegicus OX=10116 GN=Ngef PE=1 SV=2
Q8CHT1Ephexin-1 OS=Mus musculus OX=10090 GN=Ngef PE=1 SV=1
Q5VV41Rho guanine nucleotide exchange factor 16 OS=Homo sapiens OX=9606 GN=ARHGEF16 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002452 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00018
all species →		SH3_1SH3 domainDomainInterproscan
PF00621
all species →		RhoGEFRhoGEF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR035899
all species →		Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001452
all species →		DomainSH3 domainInterproscan
IPR000219
all species →		DomainDbl homology (DH) domainInterproscan
IPR047271
all species →		FamilyEphexin-likeInterproscan
IPR047270
all species →		DomainEphexin-like, PH domainInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12845
all species →		GUANINE NUCLEOTIDE EXCHANGE FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0090630
all species →		Biological Processactivation of GTPase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0086.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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