Detailed information of agem_s0087.g46.t3 in Acropora gemmifera

Genomic Location: sc0000087_pilon:1125854...1146820
NR annotation: XP_029195125.2, LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92620Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens OX=9606 GN=DHX38 PE=1 SV=2
Q17R09Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus OX=9913 GN=DHX38 PE=2 SV=1
P34498Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans OX=6239 GN=mog-1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000316 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07717
all species →		OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF04408
all species →		HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00270
all species →		DEADDEAD/DEAH box helicaseDomainInterproscan
PF21010
all species →		HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011709
all species →		DomainDEAD-box helicase, OB foldInterproscan
IPR048333
all species →		DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR007502
all species →		DomainHelicase-associated domainInterproscan
IPR011545
all species →		DomainDEAD/DEAH box helicase domainInterproscan
IPR002464
all species →		Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934
all species →		ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004386
all species →		Molecular Functionhelicase activityInterproscan
GO:0005622
all species →		Cellular Componentintracellular anatomical structureInterproscan
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0034458
all species →		Molecular Function3'-5' RNA helicase activityInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12815DHX38, PRP16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16EC:5.6.2.6
Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP