Gene detail

Detailed information of agem_s0088.g46.t1 in Acropora gemmifera

Genomic Location: sc0000088_pilon:985371...990545
NR annotation: XP_015778780.1, PREDICTED: TNF receptor-associated factor 4-like isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P70191	TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1
Q13077	TNF receptor-associated factor 1 OS=Homo sapiens OX=9606 GN=TRAF1 PE=1 SV=1
P39428	TNF receptor-associated factor 1 OS=Mus musculus OX=10090 GN=Traf1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan