Gene detail

Detailed information of agem_s0097.g33.t1 in Acropora gemmifera

Genomic Location: sc0000097_pilon:315717...326835
NR annotation: XP_044184127.1, sorting nexin-8-like [Acropora millepora]
Species abbreviation AGEMM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0097.g33.t1

GCTGCACTGAGTTTTGGGTCTGTTCCCGCGTTTTATCGCGAAATTTATCAGATCGTGTGTCCAGATCATGAAGAGAGGATTGATAGGGACATGTTCGTCAAGATCTTAGTAAAATCCAGTCTACCAAAGCAATCCCTCAGCCAGATATGGGAAGCAGTGGACCCAAGACAAGATGGTTATGTGACCAGAGATGGTTTGTACAAGGCATTAGCATTGACAGCACTTGCACAACAAGGAAAAGGCATTTCGGGGAAATCACTTGAAATGTTTGCTGATTCAGAATTACCAAAACCTTCTCTCGGGGACTTATCTGATCTTAAGACGCTTAGTGTTCGTCATAGGCGTGAACATAATCCTAATGTTCTGGGCTACAACTACGATGAACTTGTTACTCTTGATACTGTTGACGTAGAACTTGTACCAGAAAAGAAAGGAATATTATTGAAACACAATGAGTATCATGTGTCAAGTAAGCGGCATAACTGCACTGTAAATCGGCGTTACAACGACTTTGTTGCATTTCACGATTTATTACTGTTAAGATTCCAGTATCGTCTCATTCCTTCACTTCCCCCGAAAAAACTCATGGGAGGGAGTAAAGAGTTCATTGAAGCAAGGAAAAGAGCCTTAAAGCGATTTCTTACTCTTGTGGTTCGACATCCAGTGCTTTGTGAAGACAGGATTGTGAATTTTTTCCTTACTGTGAAAGGCTCGGATATTGGGCAAAAAATGAAGGATCAATTTAAATCAATGCCTGATGAATTCATGTCAAGTCCACTTGCATCCAAAGCAAAGGATCTTGTCCCCATGGATACACAAAGTAGCTTTCAAACCAGTCGATTACAGATTCAGGCCATTCAGAACAGTGTGGAAAAGCTCAAAGATGTTGCTGAGAGAATGACAGCAAGGGCTTTAGGTTTTTCTTCTGATATGCTTCATTTTGCCAAAGAGCTTACTGCGTTGAGCAATGAACCACACCAAACAACAGTATGGGCAAGTGGTAATGATAATTCATGGGGAAATCTTAAGCATGGCTTCACTGGGATCACCTCCTACTACTCCAAACTTTCTGAAGCAGGAGCGAGCTGGTTCAATAGAGAAGATACCGGTGCTGTTGAGTACTTTGCCCTTTTCTTGGACTTGACAACTAGTTTCAAGGATCTTTGTGAGCGACATGAGAAAGGAGTCCTGAAAGATCACCAAAACTCACTGCAAAAGATGCAACAGATTAAAAAACGTCAGATTGCAGCGCAGGCAAAAGGACAAGAGTATCAAGTTGATCAGCTGGAGTCTAAAATCGTTGAACAGGAAACTGATATCAGTAATATGGAGAACAGAAACTTTTACTCTCTGCATTGCCTGCAGTTAGAGACACAGTTGATTCATGCTAACATGAAGATCCTTGCCATTGCTCTGCAAAAGATGGTAGCTTCACAAATTGTTGCACACAAAGAGCTTGGTGAAGTGTGGAATGAGCTTGAGCCTCATGTGGAAAGGTTACTTCCCAGCAGTTCTCCTGTGACTTCACCACAAGGCTCTCCACCAATGAAGTAATGTGAATTCAGCTGCTCTCAAGCATGAGAACAGGATTCAGTCATCCCGTTCTTAACCTGCAGACATGAACAGCAAAAACAAAAACAGTTCTCCGGGAAATAAGGGACAAAAGATGTCAGTTTACGATAATTGTAtagagcagttttcaaatgactgtcgaaagtaatgacgagattgcgattgcttcgcttagtgattggcttaaatgactcgcgccagtttttcaaccaatgagagcctaaaccaaaaccaatcgcaccttgcaggaattgtgattggttcatggcgctgtttgttcctattttgattggtcgcagtaattgctgtggttttggtttttcgacagtcatttgaaaaccgctcAAATAATTACAAGCAATTTGATTTCATTACAAAAATTAAATAATATCATACTTTTTCATAAAGCAAGGTGTAAACCACCGTAGAAAACATGCGTTTGCATCATCTCTCAAGTTATTAAGCAGAAAAGGAGCTGCAGCTTGTGAAATCACAAGAATGGACTTGAATCTCAAGCTTTTATTAGCATGGTCAGGTTTTGAATTTCCAATGAACCATGAGGTAGCGAACTATTTACACTGTTTACACATTTTTTCCTAGGTGTTTATTTTTATTGACTTTGGTGAAACTGTAGGGCAGTCATCCTAAAGAGACATGTTAACAATATTTCATTTTTGTCAAAGTGGACAAAAAGTGCTAAAACGGAGACATTGATTTCTAATATGACTGAAATGTCTTCCAATAGTTAGGAATGCGAAACTGTTGCTACTTGTACCTTACTTGAAGTTAGAGAATAATCTTAAGATTGAAATCGTGACTAGGCCATCTACAGTTTCAAAAAGAAGTTTTAACGATGGCTTGTCCACGCCGTCCTTTGAAGATTGACATTCAAGAAAAGTTGAAAAATAGCTTAGAAGAAGGCTAGCTTTTGTAAGAAAGACATCAATGTGGCTTGTTAGAAAAGAGTCACAAAAATAAATTAATGTTCAAAATCTGCTCACCTGGAAGCAGATACGATTTAGATCAGTTTGACTTCGCCTTCACATTAACTTGTAGAAAGGGTTCGAAAAGGATTACGGGTAATTTGTAGCCAGTACTGACAGTACAGTCTCGCCATTGAGCAAGCAATACGACTGCGAAGACTGTGCCTTGGTAAACAGCACCATTCACCTTTTACTTCAAATTCGTTGGACAACCTTGGTTATATAACATGAATACGTAATCAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5X2	Sorting nexin-8 OS=Homo sapiens OX=9606 GN=SNX8 PE=1 SV=1
Q2KHV6	Sorting nexin-8 OS=Bos taurus OX=9913 GN=SNX8 PE=2 SV=1
Q8CFD4	Sorting nexin-8 OS=Mus musculus OX=10090 GN=Snx8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006096 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF19566 all species →	Snx8_BAR_dom	Sorting nexin 8/Mvp1 BAR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR045734 all species →	Domain	Sorting nexin 8/Mvp1, BAR domain	Interproscan
IPR028662 all species →	Family	Sorting nexin-8/Mvp1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46571 all species →	SORTING NEXIN-8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0097.g33.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.