Gene detail

Detailed information of agem_s0103.g31.t2 in Acropora gemmifera

Genomic Location: sc0000103_pilon:636435...648270
NR annotation: XP_029212356.2, anaphase-promoting complex subunit 5-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0103.g31.t2

ATGGCGGCAAAATGTCAGAAAGATTGGGTTTCGCCTCACAAAGTTAGTCTTTTAATACTAGTCAAATACATAAGTTCGCGTTCTACAGAAGAAGAACACGAAATTTATGCAGACTGTTTAACAATTTGCAGAGATAAATTGTCTTTACTTCTGCTCGAATTCTTTGAGGCACCTGATCTGAATTTATGCCAGCTATCTCAGCAGCTGAAAATGGTGGATGTGAGGTTGCCTGGACTTGTCATAAAAAGCTTGCATGTGCTGTTAGAGAATGGCATTTCCGGCATATCCGAGTTCTTTGAATCCTTAGAAAAGCTTTTGGCAGGACAAGAACCTTCCTTACACAAAAAGAGTTTATTTGGTTTGTTTACCCGACGGATGATCCTATCATTCCACAAGATGAGCTTCAGCCAAGTGAGTCATTTTGTAGATCTACTGAGGATTTATCTTCAAGATGACTGTACAAGTGTTAATATTGACATGGCAACAGATAGTGGTGAAGGTATCAGCATACAGAGTATGGGAGTTGAGGAGGATGAAAGTATGACAGAAAAGACCAGGAAACCATTCCTTCAGGGTTCTGTGTCAAACAGACAAGCTGAATTCTTTCTGGCAAAGCAGGTTTCACTTATTCAGTCTGCGGAAGAAAAAGCTCTTTCTCCACCTGAATTACAGTCAAGAATCAACAGCATATTAGCTGCTTCTCCTAACATTGCAGAAGCTCACTATGCAAGCTTTTTCAACTGTTTGAGAGCAGAAGAATTCAAGGAAGCACTGGATAGTCTGTACCATTATTTTGAGCAGCAACAGTGGCAAGGAGAATCTGCTTTCCATGCAAATAAACCAGCTGGTGAATCAGAGGAAACTGAGGCTGAACGCTGTCACAGATTCCGATATGCTGCTCTAACTCTAGCAGCACTTCATTGTAGATTTGGTCACAGGCAGGAAGCTATGGCAGCCCTGAAAGAAGCTATACAAATTGCACAGGAGACCAATGACCATGTTTGTCTGGAACATTGTCTGGGATGGCTCTACAGATTGGAACAGGATGGTAGCACTCAAGCAAAGCAATTGTTGGACAGATTTGTTGCCAGAGCTTCTGAGCTCAAAATTCCTTATTTAACATCCCTGGGAATGCTAAGCCATTGTCAATATGAAGCTATGGCTGGTGCATCACCTCCTAAAGTTTTACAAAACCAATTGCAAATGAACATTGTGAACTCACAGAACTCTCTGACAGACTTGATGACCACTGCACACATCCAGCAAGCAGCCACATGGCAGCTCTATGGGAAACATAAGAAATCAATATTGGAGAATTCAGCTTTACTTTTCTTGGAGAATGTGTTGGACGAATCGGATCTTTTATGCGTTTATGATGTACTCAACCGGAAAAATCCTTGTTTACCTTACTGGAATTATCGACATTTCGACTTGAACACCATTTCGCAAGACGAATGCAAAACCGAATTTAGATTTGGAAAGACGGAAATCCTTGTTCTTGCAGAGGCTTTGCAAATTCCACACTGTTTTACCTGTGTAAATGGAACGGCAGCATCAggcattgaaggtttgtgtatgctgcttaaaaggttcacctatccatgcagactttcggatatgataccgcgatttggtcgatctgtccctgagttgagtcttattttatctgaagtttgtaactatgtttacaacactcatggacatcttttatctgaccttaatcaaccttggttacaaccaaatcaacttcaggcgtttgctgatgcaatacatcgaaaaggagccacattgaataattgctgggggtttattgacggaactgtgagacctgtatgtcgacctggtgaaaatcaacgtgtcttatacaatggacataaaagagtacatggaattaaattccagtctgtcgttgccccgaatgggatgattgccaacctgtatggacccgttgaaggaaaacgacatgatgctggtatgctaacaatgtcaaatcttctaaatcagctacaacaatactcctattcacctaatggacaacctctctgtatttatggcgatcctgcctacccagttcgagtacatctgcagtctccttatcaccatgggcagctaacaaatgcacaaaaggcatttaacacttcaatgagttcagtaaggatagctgtggaatgggtttttggcgacattgttaactactttggatttcttgactttaagaagaacttaaaatttggacttagccctgttggaaaaatgtactgtgtttgtgccctgctacgaaatgcacttacctgcctgtatgggtcatcaacttcatcattttttgAATTGCAGCCTCCTAGCATTCATGATTATTTTCAAGTATAA

Transcript

agem_s0103.g31.t2

CACTGGAGTTATCTTTTGCTCGACAAAACAAAAAAGAGAGCTGGCGCTGATTTTCAAACTTTTCAAAATGGCGGCAAAATGTCAGAAAGATTGGGTTTCGCCTCACAAAGTTAGTCTTTTAATACTAGTCAAATACATAAGTTCGCGTTCTACAGAAGAAGAACACGAAATTTATGCAGACTGTTTAACAATTTGCAGAGATAAATTGTCTTTACTTCTGCTCGAATTCTTTGAGGCACCTGATCTGAATTTATGCCAGCTATCTCAGCAGCTGAAAATGGTGGATGTGAGGTTGCCTGGACTTGTCATAAAAAGCTTGCATGTGCTGTTAGAGAATGGCATTTCCGGCATATCCGAGTTCTTTGAATCCTTAGAAAAGCTTTTGGCAGGACAAGAACCTTCCTTACACAAAAAGAGTTTATTTGGTTTGTTTACCCGACGGATGATCCTATCATTCCACAAGATGAGCTTCAGCCAAGTGAGTCATTTTGTAGATCTACTGAGGATTTATCTTCAAGATGACTGTACAAGTGTTAATATTGACATGGCAACAGATAGTGGTGAAGGTATCAGCATACAGAGTATGGGAGTTGAGGAGGATGAAAGTATGACAGAAAAGACCAGGAAACCATTCCTTCAGGGTTCTGTGTCAAACAGACAAGCTGAATTCTTTCTGGCAAAGCAGGTTTCACTTATTCAGTCTGCGGAAGAAAAAGCTCTTTCTCCACCTGAATTACAGTCAAGAATCAACAGCATATTAGCTGCTTCTCCTAACATTGCAGAAGCTCACTATGCAAGCTTTTTCAACTGTTTGAGAGCAGAAGAATTCAAGGAAGCACTGGATAGTCTGTACCATTATTTTGAGCAGCAACAGTGGCAAGGAGAATCTGCTTTCCATGCAAATAAACCAGCTGGTGAATCAGAGGAAACTGAGGCTGAACGCTGTCACAGATTCCGATATGCTGCTCTAACTCTAGCAGCACTTCATTGTAGATTTGGTCACAGGCAGGAAGCTATGGCAGCCCTGAAAGAAGCTATACAAATTGCACAGGAGACCAATGACCATGTTTGTCTGGAACATTGTCTGGGATGGCTCTACAGATTGGAACAGGATGGTAGCACTCAAGCAAAGCAATTGTTGGACAGATTTGTTGCCAGAGCTTCTGAGCTCAAAATTCCTTATTTAACATCCCTGGGAATGCTAAGCCATTGTCAATATGAAGCTATGGCTGGTGCATCACCTCCTAAAGTTTTACAAAACCAATTGCAAATGAACATTGTGAACTCACAGAACTCTCTGACAGACTTGATGACCACTGCACACATCCAGCAAGCAGCCACATGGCAGCTCTATGGGAAACATAAGAAATCAATATTGGAGAATTCAGCTTTACTTTTCTTGGAGAATGTGTTGGACGAATCGGATCTTTTATGCGTTTATGATGTACTCAACCGGAAAAATCCTTGTTTACCTTACTGGAATTATCGACATTTCGACTTGAACACCATTTCGCAAGACGAATGCAAAACCGAATTTAGATTTGGAAAGACGGAAATCCTTGTTCTTGCAGAGGCTTTGCAAATTCCACACTGTTTTACCTGTGTAAATGGAACGGCAGCATCAggcattgaaggtttgtgtatgctgcttaaaaggttcacctatccatgcagactttcggatatgataccgcgatttggtcgatctgtccctgagttgagtcttattttatctgaagtttgtaactatgtttacaacactcatggacatcttttatctgaccttaatcaaccttggttacaaccaaatcaacttcaggcgtttgctgatgcaatacatcgaaaaggagccacattgaataattgctgggggtttattgacggaactgtgagacctgtatgtcgacctggtgaaaatcaacgtgtcttatacaatggacataaaagagtacatggaattaaattccagtctgtcgttgccccgaatgggatgattgccaacctgtatggacccgttgaaggaaaacgacatgatgctggtatgctaacaatgtcaaatcttctaaatcagctacaacaatactcctattcacctaatggacaacctctctgtatttatggcgatcctgcctacccagttcgagtacatctgcagtctccttatcaccatgggcagctaacaaatgcacaaaaggcatttaacacttcaatgagttcagtaaggatagctgtggaatgggtttttggcgacattgttaactactttggatttcttgactttaagaagaacttaaaatttggacttagccctgttggaaaaatgtactgtgtttgtgccctgctacgaaatgcacttacctgcctgtatgggtcatcaacttcatcattttttgAATTGCAGCCTCCTAGCATTCATGATTATTTTCAAGTATAAGTCAGGCCCAAGTTTTCAAAGAGGGGATACCACTATCCACTGACAATAGGTTTTAATGGTGCTTCTTCACTAGACAGTGATTTATAGTCCCCAATAGTTCAAAATTTCATTTCAATACAAAATTGCACACCAT

Protein

Uniprot

Uniprot term	Description
Q9UJX4	Anaphase-promoting complex subunit 5 OS=Homo sapiens OX=9606 GN=ANAPC5 PE=1 SV=2
Q5RE52	Anaphase-promoting complex subunit 5 OS=Pongo abelii OX=9601 GN=ANAPC5 PE=2 SV=1
Q5ZKK3	Anaphase-promoting complex subunit 5 OS=Gallus gallus OX=9031 GN=ANAPC5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12862	ANAPC5	Anaphase-promoting complex subunit 5	Repeat	Interproscan
PF13359	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF21371	Apc5_N	Anaphase-promoting complex subunit 5, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037679	Family	Anaphase-promoting complex subunit 5	Interproscan
IPR026000	Domain	Anaphase-promoting complex subunit 5 domain	Interproscan
IPR027806	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR048968	Domain	Anaphase-promoting complex subunit 5, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12830	ANAPHASE-PROMOTING COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0031145	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0045842	Biological Process	positive regulation of mitotic metaphase/anaphase transition	Interproscan
GO:0070979	Biological Process	protein K11-linked ubiquitination	Interproscan