Gene detail

Detailed information of agem_s0104.g40.t1 in Acropora gemmifera

Genomic Location: sc0000104_pilon:735331...774070
NR annotation: CAH3021707.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0104.g40.t1

ATGCTCATCAAAATATTCGCACCCGAGAATCTGGGGGAGGCTGAAAAGAACTTTCCTCATTTGCTATTACTCTTCATTGGTCTCAGTGACGCTTTGTATTGGGTGATGACAGGTTATGCAGGGCGAGGATATCGAACGCCACCATATTTGCAAGCGATCTTGGGAAATTTCCTTATTCCGCTGACGATTATAATAAGAATAGTTGTGTTACACAAGAGGCCCACCAGATTAAAACTCTTTTGCGGTTTGGGTGTTTTCTTTGGATTATTTATCTGTCTTATTCCAACGATGTTTCCCAAATTTAATGACAAGGCCAGCCTCGATGACGGCGTTCAGCTCGATAATACGTCCAGGGTGATATGGCCATTGATATTTATGTTTGGAAGTCTCCCATTAGCTACTATGAATGTCCTTCAAGAACGTGGAGTAAAAATGGAAAATTCATCGGAGGAACAAGTCAACATCGTCTTCTTTCTGTTCTGGACCTCGACTTACGAATTCTTGAGTATCTTGTTGCTGTCCTGGGTAGACATCCTTCCTTGGTTTGGAGATAGCGAAATCTCAACCTTCGCAAACAACTGGTGGACTGGACTCCAGTGTATGTTTGGGGGAGTCGGCTGTGGCTCCGCGCCAGGAGTCTCCGGATTGGTAAACATGCTTGCGCATATCGTATCTCACTTGGGATCTGCTAACTTGCTGAGACATGCCGAGGGAGCAACATGGCTGGCGATTGTTGTGTCACTTGTCACCCCTCTTGGATTCCTATTCTGGACTTTATTCAGCGAATCACCGTTCATGTGGCATCCAGAATGCCACTTGAGCACTTGGTTCAGCATCGGTGCTCTTTTCCTTATGGTTCCCGCCACTTTTATTTACAACATGGGTGGGCCAGAGATAACTGAGGACCCCAATGGAGCAAACTCTGAAAGGCGGGAAATCTACATCAGTGCTAATTCTGTTATCCTTCAGTGTCGCAGCTCGTCCTCCGTTTATGATGTGGAACAACCCCTTCTCCACAACAAAGCGTCATATGCAGGAATGCCAGAGCGAAATCATCCTTCTGACCTGTTTGCAAGGCGGAAGACAGTTAAGATCGGGTATTTCGAGATTCCCTTGTTCATTGCCAATTTGATGTTCGCATTTGTAGCAGTGGCTGGTCAAGTCGGCCAAAACGTGAGTTTGCCGTTGTGGGTGGACTCGACAAATGGAAACACTTCGGGACCAACCGTAGATGCTTACTTTGTGCTTTCATTTGCGAGTTTGTCTTATGTCGTGATTTTCGGGGTAGGAACGTTGATCATTCGATTAGTTTGGCCTAGTGCTATAGGCGAAACGGAAAGACGTTTTCCCCACCGTTTGATGTTTCTCGTTGGCTTGTTCGATGCATTAAACGGGGCGCTGGTGGTTTTTGCTAGTAAAGGCTCCAGAACACCGCCATATCTTCAAGCGATCCTTGGAAATTTTATGATTCCACTTACGATTATATTTAGATTTTTGATCCTGAAAAAGAAACCAACCCTTCTAAAACTATGCTGTGGTATAGTTGTTGTCGTCAGCCTTTTTGTTTGCCTCATTCCAAGAATTTTTCCTAGTATTGACCCCAGAGCTCGCAAAGTGAAGAATGAGACTGACAGCATCTCCCGAGTCATGTGGCCAATCATATTCATGCTTGGTTTTCTTCCAGCTACCATAATGAATGTCTTGGAAGAAAAAGGGCTTAAGATGGAGAACAAGACCTCAAGAAAAGGAATCAACTTAGTCTTCTTTTTGTTTTGGACATCTACATATCAGTTTTTGTGTGTTGCACTTCTCTTTTGGGCTGATATTCTACCCTGGTATGGAAATGTGGCTAACGTCAAGGAGTTTGGAAGAAATTGGTGGTATGGGTTCCAGTGTTTCTTTGGTGGGGCAGGCTGCAGTGCAACCTCAGGTGTGAGGGGTACGATGTTTATCCTGATGTATGTCTTATCTTATGTTGGAGGTGCCAATTTATTGAGACATGCCGAGGGAGCCACTTGGCTGGCAATTGTTGTATCTCTTGTCACACCTCTTGGATTTCTGTTCTGGACTTTGTTTAGTGAATCACCATTTAAGTGGCATCCAAGAGCTGATGTGAAAACCTGGTTCAGTATTGGCGCTCTAGCTATTATGGTTCCAGCCATTTTCATTTACAATTGGGGTGCTCCTGAGGTTACTAAAAAAAAGGTTGAGAGAAAAGAAAACTCGGAACTCGATGCACTGTTCAGCACAGGAGGCTTATTTCAACCGCAATTTGTATCGGCAGCATCGATAAGTAAGGCACCTGAGTTGACAAAAAAGTCAACTAATCTCTCCACGAACCAAAAATTTAATGGTGATACTAAGGAAGGTAAAGATACAACAGGAGAGGCATTTGCTCATGGATCAAGAAAAAGGAAAGTCCCTACCAAggatgatgaaaatgatgataGACGAGCACAGAGAGTGAAGAGGAAAACGTTTTTTTCCAATAAAGAAGTAGAGGATCCTGAAAGGCTTGCGAGAACAGTGTTTGTTGGAAATCTACCCGTTGCATTAACTAAAAGGAAACTGAAGCAGCTGTTTGTTAAATATGGTGAAGTGGAAAGTGTAAGATTTCGCTCTGCAGCTCTTGCTCAACCTCATTTTTCAAGAAAAGTGGCAATGAAAAATAGGGAGGAGCTTCACACTTCCAGACACAATATCAATGGATATGTTGTCTTTAAAGAGAAAGAATGTGCTCTAAAAGCATTGAAAAGCAATGGAAAAGAAGTTGATGGCCTTCACATCAGAGTCGATTTAACTGGTCAAGAAAATGAGCATGATCATGCACGATCAATATTTATTGGAAATTTACGATTTGATGCAGAGGAAGAAAATATACGGCAAGCTTTTGCTGACTGTGGCACTGTTGAATCTGTGCGTATAGTTAGGGACAATAAAACTGGCATTGGCAAGGGATTTGGTTTTGTGCTTTTCAAGAAAAAAGAGGCTGTGATGTTTGCTTTAAGGAAGAACGGAACAGATTTCAATGGGAGATCCTTACGTATCTTTCCTTCTTCAGAAAACCCACGTAAAGGTCATTTCAAGGAATCCAAGAAAGGAAAAGCCAATGTGTTTTCATTTAGTGGAGTCACTGCAAAACGAGGAATTAAGAATGATAACATAGGAAATAGGAGAGAACGACCAGGAAAAAAAGGAATAGGATTGAGAAGCAAAGGTCCTAGCTCAAAACCAGCAAAAAGTCAAAATTTTAAAAAACCATTATCGGCAAAAAAGCATAATGTTAAGAGTATTAATAGGGAAAAGTTTCAAGGCACTAGAAAAGGAAAATTCAGGTAG

Transcript

agem_s0104.g40.t1

TCGGAAGTTTTTTTATAATGTCGTTCTCATGTTTGTCACTTATCTTTATTTTTGGACTTGGAACGATGCTCATCAAAATATTCGCACCCGAGAATCTGGGGGAGGCTGAAAAGAACTTTCCTCATTTGCTATTACTCTTCATTGGTCTCAGTGACGCTTTGTATTGGGTGATGACAGGTTATGCAGGGCGAGGATATCGAACGCCACCATATTTGCAAGCGATCTTGGGAAATTTCCTTATTCCGCTGACGATTATAATAAGAATAGTTGTGTTACACAAGAGGCCCACCAGATTAAAACTCTTTTGCGGTTTGGGTGTTTTCTTTGGATTATTTATCTGTCTTATTCCAACGATGTTTCCCAAATTTAATGACAAGGCCAGCCTCGATGACGGCGTTCAGCTCGATAATACGTCCAGGGTGATATGGCCATTGATATTTATGTTTGGAAGTCTCCCATTAGCTACTATGAATGTCCTTCAAGAACGTGGAGTAAAAATGGAAAATTCATCGGAGGAACAAGTCAACATCGTCTTCTTTCTGTTCTGGACCTCGACTTACGAATTCTTGAGTATCTTGTTGCTGTCCTGGGTAGACATCCTTCCTTGGTTTGGAGATAGCGAAATCTCAACCTTCGCAAACAACTGGTGGACTGGACTCCAGTGTATGTTTGGGGGAGTCGGCTGTGGCTCCGCGCCAGGAGTCTCCGGATTGGTAAACATGCTTGCGCATATCGTATCTCACTTGGGATCTGCTAACTTGCTGAGACATGCCGAGGGAGCAACATGGCTGGCGATTGTTGTGTCACTTGTCACCCCTCTTGGATTCCTATTCTGGACTTTATTCAGCGAATCACCGTTCATGTGGCATCCAGAATGCCACTTGAGCACTTGGTTCAGCATCGGTGCTCTTTTCCTTATGGTTCCCGCCACTTTTATTTACAACATGGGTGGGCCAGAGATAACTGAGGACCCCAATGGAGCAAACTCTGAAAGGCGGGAAATCTACATCAGTGCTAATTCTGTTATCCTTCAGTGTCGCAGCTCGTCCTCCGTTTATGATGTGGAACAACCCCTTCTCCACAACAAAGCGTCATATGCAGGAATGCCAGAGCGAAATCATCCTTCTGACCTGTTTGCAAGGCGGAAGACAGTTAAGATCGGGTATTTCGAGATTCCCTTGTTCATTGCCAATTTGATGTTCGCATTTGTAGCAGTGGCTGGTCAAGTCGGCCAAAACGTGAGTTTGCCGTTGTGGGTGGACTCGACAAATGGAAACACTTCGGGACCAACCGTAGATGCTTACTTTGTGCTTTCATTTGCGAGTTTGTCTTATGTCGTGATTTTCGGGGTAGGAACGTTGATCATTCGATTAGTTTGGCCTAGTGCTATAGGCGAAACGGAAAGACGTTTTCCCCACCGTTTGATGTTTCTCGTTGGCTTGTTCGATGCATTAAACGGGGCGCTGGTGGTTTTTGCTAGTAAAGGCTCCAGAACACCGCCATATCTTCAAGCGATCCTTGGAAATTTTATGATTCCACTTACGATTATATTTAGATTTTTGATCCTGAAAAAGAAACCAACCCTTCTAAAACTATGCTGTGGTATAGTTGTTGTCGTCAGCCTTTTTGTTTGCCTCATTCCAAGAATTTTTCCTAGTATTGACCCCAGAGCTCGCAAAGTGAAGAATGAGACTGACAGCATCTCCCGAGTCATGTGGCCAATCATATTCATGCTTGGTTTTCTTCCAGCTACCATAATGAATGTCTTGGAAGAAAAAGGGCTTAAGATGGAGAACAAGACCTCAAGAAAAGGAATCAACTTAGTCTTCTTTTTGTTTTGGACATCTACATATCAGTTTTTGTGTGTTGCACTTCTCTTTTGGGCTGATATTCTACCCTGGTATGGAAATGTGGCTAACGTCAAGGAGTTTGGAAGAAATTGGTGGTATGGGTTCCAGTGTTTCTTTGGTGGGGCAGGCTGCAGTGCAACCTCAGGTGTGAGGGGTACGATGTTTATCCTGATGTATGTCTTATCTTATGTTGGAGGTGCCAATTTATTGAGACATGCCGAGGGAGCCACTTGGCTGGCAATTGTTGTATCTCTTGTCACACCTCTTGGATTTCTGTTCTGGACTTTGTTTAGTGAATCACCATTTAAGTGGCATCCAAGAGCTGATGTGAAAACCTGGTTCAGTATTGGCGCTCTAGCTATTATGGTTCCAGCCATTTTCATTTACAATTGGGGTGCTCCTGAGGTTACTAAAAAAAAGGTTGAGAGAAAAGAAAACTCGGAACTCGATGCACTGTTCAGCACAGGAGGCTTATTTCAACCGCAATTTGTATCGGCAGCATCGATAAGTAAGGCACCTGAGTTGACAAAAAAGTCAACTAATCTCTCCACGAACCAAAAATTTAATGGTGATACTAAGGAAGGTAAAGATACAACAGGAGAGGCATTTGCTCATGGATCAAGAAAAAGGAAAGTCCCTACCAAggatgatgaaaatgatgataGACGAGCACAGAGAGTGAAGAGGAAAACGTTTTTTTCCAATAAAGAAGTAGAGGATCCTGAAAGGCTTGCGAGAACAGTGTTTGTTGGAAATCTACCCGTTGCATTAACTAAAAGGAAACTGAAGCAGCTGTTTGTTAAATATGGTGAAGTGGAAAGTGTAAGATTTCGCTCTGCAGCTCTTGCTCAACCTCATTTTTCAAGAAAAGTGGCAATGAAAAATAGGGAGGAGCTTCACACTTCCAGACACAATATCAATGGATATGTTGTCTTTAAAGAGAAAGAATGTGCTCTAAAAGCATTGAAAAGCAATGGAAAAGAAGTTGATGGCCTTCACATCAGAGTCGATTTAACTGGTCAAGAAAATGAGCATGATCATGCACGATCAATATTTATTGGAAATTTACGATTTGATGCAGAGGAAGAAAATATACGGCAAGCTTTTGCTGACTGTGGCACTGTTGAATCTGTGCGTATAGTTAGGGACAATAAAACTGGCATTGGCAAGGGATTTGGTTTTGTGCTTTTCAAGAAAAAAGAGGCTGTGATGTTTGCTTTAAGGAAGAACGGAACAGATTTCAATGGGAGATCCTTACGTATCTTTCCTTCTTCAGAAAACCCACGTAAAGGTCATTTCAAGGAATCCAAGAAAGGAAAAGCCAATGTGTTTTCATTTAGTGGAGTCACTGCAAAACGAGGAATTAAGAATGATAACATAGGAAATAGGAGAGAACGACCAGGAAAAAAAGGAATAGGATTGAGAAGCAAAGGTCCTAGCTCAAAACCAGCAAAAAGTCAAAATTTTAAAAAACCATTATCGGCAAAAAAGCATAATGTTAAGAGTATTAATAGGGAAAAGTTTCAAGGCACTAGAAAAGGAAAATTCAGGTAGTTATGACTCCCAATGGTCCACATTTCATATACAGTGTATCAAAATTAAAGCACAACAGCAAGATTTTCTGTGCTGTATTTTACAGACTGGTCTGTTTTCTTTGTCTTAGTTCTTAAGGGAGAGTTGAATATTGATGTGGAAGATAAATCCTTCCAGTAATTTCTCTATGTTGATGCTGTTGTATGTAGGCTATTGAAGACAAAAGTTAGGGGAAAAAAAGACAAGTACAACAGTAGTTTTAGTCATGTCATGTTCCTACTTATTTGCTAGCATGCAACACAAAGTTATCCAACAAGTTTTAATGCAATTGAAATCATGAGAGTCAGAGAGGCTTAAAACTATTTCATGGTTTAACAGTATTTGTTTTACAGTTGCGTTTAGTTAAGAGTTAAATGTATTGCCAGCTGTTTCGTTGATGTGACATGGAAGAGGAGAGTAAAGGGACAGAGTGTACATCTTATAAACATGTTATAACTTTGTGTATAAATTTCTAACAAAGGCATTTTCTATGGTTAAttatgcgataagataaattctactcgtgttcccattggtcgctatccatggtctgtgggagaacagatgcataaatcatgtcactgttagctttttcacttctttattgcttgaatacaaatggatttcatgttgctgtgggtctgttcagtaataggtcatataaaatgtcaatatgtggtaagaacgtgggtaattgtgaagaagagctacccaaaaaacctgtcggccgactgtcggtcaactgtcgaccgacagtcagcagacaggttttttggggagctcttcttcacaattaccagaacgtgaatgacactcgcttaatggctctttatgcgacatttttgtttgttacactttctggcatgatctgttatctattactgaacagacatgtcatcatggaatctatttgttaaTGAGCAATATTTTGTGTGATTTGCAAATTAAAATATGGAGGATGGCAAAATGTGTGTATTGAATTCAACTGTCCACTCAGCATGCATGTTTCCATGAATGCAAGGTAGCAATTCAAGATATTTTCTTTGCTTAAAATTGGGAGTTTCGATGAGTAACTTTTGACTTGTCCTGACTTTCTGGTTAAGGTAAAACACGTTTGTTATCCCAAGAAAATTAGCAAATTTAGCACTTGGAGCTAGAGAACTTATGAATGTTATTAATGTGTGATAAATGCATATTTTTTTCTGATTTGTAAACAGTAAGACTGAACTGTGACCTTTTTTTCCATTGACCAGGAAACTTACCCTACACAAATAATTTGACACAAAATTAGACAAGTGAAAGAGTCCAAACAAATAAAGCCTTCCCTTTTAT

Protein

Uniprot

Uniprot term	Description
P42696	RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2
Q5M9F1	RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1
Q8C5L7	RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08627	CRT-like	CRT-like, chloroquine-resistance transporter-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034221	Domain	RBM34, RNA recognition motif 2	Interproscan
IPR013936	Family	Chloroquine-resistance transporter-like	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31326	PROTEIN CLT2, CHLOROPLASTIC	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05038	SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9	-	Transporters	ko02000	deepkoala