Gene detail

Detailed information of agem_s0105.g43.t1 in Acropora gemmifera

Genomic Location: sc0000105_pilon:609340...622820
NR annotation: XP_015751417.1, PREDICTED: RNA polymerase II elongation factor ELL-like [Acropora digitifera]
Species abbreviation AGEMM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0105.g43.t1

GCGGATGTTGCTCTCGGGGTACGGTGTCAACTTGGATTGTCTAAAGGGGGAAAGAAAAATGCGATGGCTGTTGTTCTAGAGCCGAATTCTTCCTACAACCTTATATCTCGGGCAGACTCGGGCAATAATAAGCTTCTGGTACATGTAAAATTGACCGATTCCTGTTTACGAGCGCTCGAAGAGTATCAGTCCGCGCAGGTATTGTCCAGACGGAAACCTTCGATCAAGTTTTGTGGATTTCAAGGGGCAATATCCATTCCACTTGGTAAAGGCACCTCTGGAGATGAAAACACGGCAGAGTTTAAACTGGACTGTTCTGTGCTTCAGTCTGGTGGCATGGACTGCATACAGCAGTCGGACGGTAGCCAAGACATTGGAACTGTGGGCTCCATCACACACAAGATTAATGTCCGGGCAACTGACGACAGTTACCACATGACACAACAAAGAATGAAGGAAGTTGAGGAAGAAAGAAAAGGAATAAGCACAAAAGTTATCAATATGCAAAAGAAAGGGAGTAAAAAGAACAACAAGAGCATACTAGGTTACAAACAGCCCAACAGTATGAATGTGCTTTCAGCTGTGAAAAGGCAAATTAAATCTGGTCCTGGTGCTGGGGCAAAAGTTTCCAGTGGGTCAAGCAAATCTTTAAGGGAAAAAGTCATCCACTTATTGGCGGTTAGACCATACAAGAAAATTGAATTAATAGCTAGACTTACTAAAGGTGGCTTTTATGACTGATAACCAGTACAGATTATTAAAACATTTATACTCTGAAGTTCAGGTTGAAACCTGGCCAGGTTACAGCGAGACTGAAAAGCAGATGTTGCGTAGAAATATAAAAGCAGAAGCAAATGACTTGCCTTTAGTAACTTCAACGTCTTCTCCTCTGAAAAATTCTGAGGTGAACAAACAAGCGATAAAAAGAATATGTCCAAGTGAAGAAATGTCCTCAAAGAGGCAGCGTGTTTCTCACGTCAACAAAAACAACAATATTGTTATGAAGGAATCTGTGAAGAAGAGCTCAGTTGTTGAGAGGCTTTCCAAGACAAACCTTAATGATAGCAACAAGTTGTCGACACCAGTAAAGAAAGAAGATGCGGAATCAAGTTTATCTGGGAATCTAGAAAACTCCATTAATAATGTGAATAGTTTGGACTCCCCCGAATATATGAGGAAATATAAACCAATCACGACATACGAACAGCGTTGCTCGTACAAGTCGGACTTCCAGGCTGAATACCAGGTTTATAAAACTCTGAAAGAGAGAGTGGATTCTATTTCAACACAATTTACAGTACTTCAGAGCAAGCGACAGCAATATCCCGAAGATAGCGACGAAAGAAAGAAAACAGATGAACAAATTTTAGCACTCTATGAAAAGATACAGAAGGATACGTCGTGGCAACAAACGAAGAAACAGTGTCAAGAGTTACATTCTAAACTGTCGTACATAAAGGAACTCATAACTGCCTTTGACGCCGCATATGACAAGAGTATTGCAAACACGTGATGATCAGATGAATAGCACGTAATAGCTAGCTACTTGGTAGTGACGTGGTATGCTACTTGACGCCTGGATGCCAAGCGTTTCAACTAACACAAGAGGAAGAAACACAAGAATCATGTCACTACCGATATCCGGTCTTCTCCATAAAATGAAATTAAAGGAGCTCAGGGAAGGCCTGAAGAAAAAAAACTTTTTGTGCCATTGTAAATGTCATTCGAAAATCTAAAATTCTTGTAGATGCAGCTTTCTCGCAGTTTGCGCCAACTCTGCTTTGGACAATTTGGTCTGAGCCTAACTTGAACTGTCAAAAACAGCTTTGAACTAAGAGGAAAAAAAGTACTAGCAACTTACGTTAAGTTGCGGTGTTAACAATCAAAAATCGTCTTTTGACCGCAGGGAGTGTACGCTAGTTGAAAAGAATTGGATAAATTATGAATTAATATATTTTTTGCAAAAATGAAAGAGCTTGAATATCGAACGCAGTGAATGCCTCTGCTTGTATATTGCCTCATCTGTTCATTTCTCTGTAGCTGTTAGTGGATAAGGCGATGAAGACAGAACAAACTTTGCCACCGTAAAGTGTAAAATATTTTCTTCAATTACGCAGCTAGTTTAGGTTCCCTGTGATTTCTTGTCGTTTGGAATTCACGTAAAATAAGTCACCTTAAAAATCTTGTGAGTTATTGCAATTGCATGTAGGATAGAAAATTACACTGAATTTCCTTTCTTCACTTTGACTTGATGCTCTTCTGACGTCAAACCTGACCTGGGAATAAAATAAAAAATTCATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55199	RNA polymerase II elongation factor ELL OS=Homo sapiens OX=9606 GN=ELL PE=1 SV=1
Q3UKU1	RNA polymerase II elongation factor ELL2 OS=Mus musculus OX=10090 GN=Ell2 PE=1 SV=2
O08856	RNA polymerase II elongation factor ELL OS=Mus musculus OX=10090 GN=Ell PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10390 all species →	ELL	RNA polymerase II elongation factor ELL	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042065 all species →	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan
IPR031176 all species →	Family	ELL/occludin family	Interproscan
IPR019464 all species →	Domain	RNA polymerase II elongation factor ELL, N-terminal	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23288 all species →	OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000987 all species →	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0105.g43.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.