Gene detail

Detailed information of agem_s0106.g5.t3 in Acropora gemmifera

Genomic Location: sc0000106_pilon:36166...48747
NR annotation: XP_015756011.1, PREDICTED: myeloid differentiation primary response protein MyD88-like isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0106.g5.t3

CATCACGTGTTCTGTTCGCTGAGGGACAATGACGTCAAGACATAATTGAAGTTAGGAGCGTCTTCGTGTCTACGCATTTTTCTTGTCTGTAAATGTGTGGACTTGCCGTTAGTGCATCACCCTTCCCGACCCTTTGATGGGACTACCTTTTAACCTGCAGGATGGAAAGTTCAAGGAGGAAGAGGTTTACTAAGGATCAAGGATGTTTACCAAGGATCAAGGAAAGCCTTAAAAGGAAACCAAAAAATGACGGACGTAAAATGCCAGAATTCCCATTACAAAGCCAAAACCTAGAATTAACCAGAGTTGCTCTTACATCTGTGGAAGAAAGTTCTCCTGGCGATACCCAAGCAAGGGAAGAAGTTGAAATGGTGACCAGCAATGAGAAGCTCATGAAGCACTTACCTCCTGAGGGTAGAAAGACTCTGGTGGAGTTACTACAGCCATTCAACCTATTTGGGAACGACTATAGAGGACTTGCAGGCTCCCTAGGTTTTACCTCACAATTTATTGACTGGCTTAGAACCACAAATGAACCGGTCATGACATTACTAACCAATATTGAAAACATTAAGATTACAAAGGTGATTTCACATTTAGAGGAAATGGGGAGACAGGATGCAGCAGAGGATCTTCGTCAATTCGAAGAGTTAACTCGTTCTCCTGGTGAATTGGAAGAACACAAGAAAAGAATTGGTGACACTGAAGACATGCTGACTTTACACGAAAGATACGATGCCTTTGTTTGTTTCGCTGCACAAGACAACCGGTTTTTGAAAAAGCTTGTCACAACAATGGAAGCACAACCCTATAATCTACGTCTTTGCTACCCTGACCGTGACTTCCTGGGAGGTGGTTGCTACCTTGAAAATGCTGCTCTTGCTATTGAACAGATGTGCAAAAAATTTGTTGTTCTTCTGTCCAAGAACTATGATGGTAGTGAAGGAGCTGTTTTTGAGTCACACATTGCAATTACCCTAGAACCGGGAGCACAACAACAGCGCATTATCCCAATTCTTTTGGAAGACGAGTACCGCAAAACCATTCCAAAGCCAATGGCTCATCTAACCTATCTTGATTATCCTCGATGGCAAGAGAACATTCCCAAATTCTGGGAGAAATTAGCAGTGTCCCTGGGATGGAACCAGAGTCAGCAGTCATGTAGAACAGGTGAATAGTCATGAGTGCTCCCATCATCAAATTTGTGCGTCAGATGTACTCCATCAAGACGGCCATCAAAGTTCATCTTTGGAGTTCGCTTCAGATTTGGCAAGAAAAAGAAGAAGGAAATCATGTTGAAGCGTACATGAACGGTGAAtttttggcttttcatgccgttaCCTGTGTTTGTTTGTTGTCTTGAAAGGCAAAAGAGGTTGTCAAGTTACATTTGTAAAGCATTGCTAAGGTGCCTGAGAATGTGACCGTAAAGGAAGGAAGGGGTCTGTTGGCAGTAGCGATAAAGAAAGTAGCTGTTTGAAGTAAAAGGATTAGCTGTCCTTTTTTTTCTGTATTTTTATTTACACAGAAGGGAGACTTAAGTAATTTTTAAGCTTGACCCTTTTTGAAATGCAGAAGAATAAGCAATAAGTTTCCTCTGTTTGTTTTATTTTTGTAGATCCAGTATGTGAAACGTTTTTATTATAGTAGTTGCAGTCGTAGGGATTTTGTTGTCTATAGTTGTACAAAGGATTTGgagatttaggacaattttgaaatatcacgagtgttatttatgccaaatatcacttacaaatcatgccattatttgttcatactacaacctgagaaattcacccatgtaacagcattgatttattttcgtcgagttgttttgctcggttagcgagcaaattggtttcaaagttcttgttttcgtcccagctggtccagccattgatccaggtcgatgtagttttcttagcattttggttttcataactttcttttagttcctgaacttccagaatttaaaaatctggaaatctttcagcaattttttcgtaattctcgctacgagattatttcctgagttggttaccatagtaactgtaacttttaTCAGTAAATACCTCTCGGCCAATGAAATTCTCAGTTAGTAGTATAAACAACGGAATTTTTCAAAAAATGATGGCAGTGTTTGGAATTTAGACTTTGTGTTGTTTAGTCGTTATTTAACATGCATGCAGTTGTGTTAGGTTAATATCTGGCCCTAACCCCAGGCAGGATTTGCTTAATTTTGGGAGGTGTTAGTTGCAAGGATTATGAATTTTATTGCTATAACTTTTTTGACGAGAATTTCGTAGGACTAGGTAAGGGTTAAAAGTCAGCGTGTTTACACAGGGAAAGAAACGGTTACACCTTACCATAAACTTCTGAATGGCTAAAAACaaaaatattctattgtctttttgctaattagccttactagccacgttagcacagacaaagtacaaaagaaatgttcctttagaaagagactagtagtcctgattagcacataaacaaaagaataatttattggtcgccatttatgGAATCTATTGGACCAAAGGCCTTATAGTAACTTTGTCAAGGTAAATGAATAAGTTTCAATTGAAAAACAGTGATTAAATAGTTGTTTTGTAT

Protein

Uniprot

Uniprot term	Description
P22366	Myeloid differentiation primary response protein MyD88 OS=Mus musculus OX=10090 GN=Myd88 PE=1 SV=3
Q6Y1S1	Myeloid differentiation primary response protein MyD88 OS=Rattus norvegicus OX=10116 GN=Myd88 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017281	Family	Myeloid differentiation primary response protein MyD88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079	MYD88	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976	Molecular Function	TIR domain binding	Interproscan