Genomic Location: sc0000113_pilon:501476...540734
NR annotation: XP_044175634.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]
| CDS | |||||
| agem_s0113.g42.t1 | |||||
| Transcript |
| agem_s0113.g42.t1 |
| Protein |
| agem_s0113.g42.t1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q5BIM1 | E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1 | ||||
| Q6PFY8 | E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2 | ||||
| Q56R14 | E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20706 | GT4-conflict | Family 4 Glycosyltransferase in conflict systems | Family | Interproscan |
| PF00643 | zf-B_box | B-box zinc finger | Domain | Interproscan |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | Domain | Interproscan |
| PF00630 | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| PF01436 | NHL | NHL repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR001258 | Repeat | NHL repeat | Interproscan |
| IPR000315 | Domain | B-box-type zinc finger | Interproscan |
| IPR011042 | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR027370 | Domain | Zinc finger, RING-type, eukaryotic | Interproscan |
| IPR017907 | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR017868 | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR050952 | Family | Tripartite Motif and NHL Repeat Containing E3 Ligases | Interproscan |
| IPR001298 | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR034464 | Domain | PARP-10, RNA recognition motif 1 and 2 | Interproscan |
| IPR000033 | Repeat | LDLR class B repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24104 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0000209 | Biological Process | protein polyubiquitination | Interproscan |
| GO:0043161 | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0061630 | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14959 | MLL4; [histone H3]-lysine4 N-trimethyltransferase MLL4 | EC:2.1.1.354 | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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