Detailed information of agem_s0126.g18.t1 in Acropora gemmifera

Genomic Location: sc0000126_pilon:176531...179045
NR annotation: XP_015766314.1, PREDICTED: neuronal PAS domain-containing protein 2-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O61735Circadian locomoter output cycles protein kaput OS=Drosophila melanogaster OX=7227 GN=Clk PE=1 SV=3
Q8QGQ7Basic helix-loop-helix ARNT-like protein 2 OS=Gallus gallus OX=9031 GN=BMAL2 PE=1 SV=1
Q8WYA1Basic helix-loop-helix ARNT-like protein 2 OS=Homo sapiens OX=9606 GN=BMAL2 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00989PASPAS foldDomainInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF14598PAS_11PAS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013767DomainPAS foldInterproscan
IPR000014DomainPAS domainInterproscan
IPR047230FamilyCircadian locomoter output cycles protein kaput-likeInterproscan
IPR035965Homologous_superfamilyPAS domain superfamilyInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46055CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUTInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0032922Biological Processcircadian regulation of gene expressionInterproscan
GO:1990513Cellular ComponentCLOCK-BMAL transcription complexInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02223CLOCK, KAT13D; circadian locomoter output cycles kaput proteinEC:2.3.1.48
Chromosome and associated proteinsko03036deepkoala

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