Gene detail

Detailed information of agem_s0132.g17.t1 in Acropora gemmifera

Genomic Location: sc0000132_pilon:603027...642297
NR annotation: XP_029212444.2, methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0132.g17.t1

tccaaaaagccattgagtgttatgaaaaacatttgaaaattgcaatggaaaacggtcttctaggcggagaaggaacggcctatggaaatattggtaatgcttaccacgcactggctgactttcagaaagccattgagtatcaccaaagagcccttgaaattgcaatagaaatggcagatcgagaaggagaaggattggcctatggaaatctcggcaatgcttgcaactcattgggtgacttcctaaaagctcttgattatcatcaaaaacacttgcaaattgcaacagaaatcggtcttcgagccggggaaggaacagcctatggaaatcttggttatacttaccgttctctgggtaacttccgaagagccactacatatcataaaaaagatttaaaaattgcaaaagaaattggtgatcgggccggagaaggaaaagcctatggaaatctcggtaatgcttaccagtcgctgggtgactatcgaaaagccattgcctatcatgaaaaagatttgaaaattgctaaagaaatcggtgatcgggccggcgaagcaagagcctatggaaatctcggtaatgcttcccagtccctaagtggctatcgaaaagccattgagtatcatgaaaaacgtttgaaaattgcaaaagaaatcggtgatcgggctggagaaggaggagcctatggaaatcttggtaatgcctacgattcagtgggtgactatcgaaaagccattgactatcatgaaaaagatttgaaaattgcaaaagaaatcggtgatcgggccggagaaggaggagcctatggaaatcttggtaatgcctacgattcactgggtgagtatcgaaaagccattgagtttcatgaaaaacatttaaaaattgcaaaagaaatcggtgatcgggctggagaagggcgagcctatggaaatctcggtaatgcctacgattcactaagtgactatcggaaagccattgagtatcatgaaaaacatttgaaacttgcaaaagaaatcggtgatcgggccggagaaggaggagcctatggaaatcttggtaaggcctaccagtcactgggtgactatcaaacagccattgagtatcatgcaaaacgtttaaaaattgcaaaagaaatcggtgatcgggccggagaaggaggagcctatggaaatctcgATAGCAGTCGACCAGTCGTTCGGTCTTGCACTGCCGGAGGTGCTTACGTCCCTGCTATGGTTGAGGAAGGTACTATCGAGAAAGAACAGCGAACAATCTTCCTTGGGGGTCCACCTTTGGTAACAGTTCAACGTCCGGAACATCGTTATCCAGCAGAAGATCCTTATGGTATTGTTGGAGACAATCTTAAGAAATCCTTTGACGTTAAAGAGGTAATCGCAAGAATCATTGAGGGAAGTAAATTCGACGAATTCAAAGCGATGTACGGTGATACTCTTGTTACAGGTTTTATGGTGGGTAAAGATTACGAGGCCGGTGGTATCGCTAAAAATGGCGCCAAAATGGTTACAGCTGTGTCATGCGCGCAAGTGCCCAAGGTAACAGTGATCATCGGTGGAAGTTTTGGCGCGGGAAATTACGGAATGTGTGGCCGCGCATACGGCGCACGTATTTCAGTGATGGGCGGCGAACAAGCTGGAACAGTGTTAGCTACAATCACAAGAGATCAAAGAGCGAGAGAGGGAAAGGAGCTGACAGCTGAGGAAGAAAATAAAATAAAAGCTCCCATAATAAAGAGATTCGAAGAGGAAGGGCATCCTTACTATTCATCTGCAAGGTTATGGGACGATGGTATCATCGACCCAGCCGACACGCGGACAATCATGGGTCTAAGTTTAAGCGCGGCTTTGAATGCTCCGATTGGTGATCCCAAATTTGGTGTGTTTAGAATGTAGCTGGAAAATTGATCGAGCTGACTACTGGCAGAGTAAGATCACGATCGGAGTGCGACTACATTCAATGAAATGAGCCCGAAAGAGCTTCCAGGTGCTTTCTAGAAATGATACTAAGAAAACAGAATAATGATT

Protein

Uniprot

Uniprot term	Description
Q5XIT9	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mccc2 PE=2 SV=1
Q3ULD5	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus OX=10090 GN=Mccc2 PE=1 SV=1
Q9HCC0	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens OX=9606 GN=MCCC2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034733	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011763	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016874	Molecular Function	ligase activity	Interproscan