Detailed information of agem_s0134.g35.t2 in Acropora gemmifera

Genomic Location: sc0000134_pilon:636539...673202
NR annotation: XP_029199743.2, cadherin-23-like isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2PZL6Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q6V0I7Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2
P33450Cadherin-related tumor suppressor OS=Drosophila melanogaster OX=7227 GN=ft PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028CadherinCadherin domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF00017SH2SH2 domainDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF01085HH_signalHedgehog amino-terminal signalling domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR050174FamilyProtocadherin/Cadherin-related Cell AdhesionInterproscan
IPR001657FamilyHedgehog proteinInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR000980DomainSH2 domainInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR009045Homologous_superfamilyHedgehog signalling/DD-peptidase zinc-binding domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR000320DomainHedgehog, N-terminal signalling domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24028CADHERIN-87AInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007267Biological Processcell-cell signalingInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan

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