Gene detail

Detailed information of agem_s0136.g11.t1 in Acropora gemmifera

Genomic Location: sc0000136_pilon:96531...106045
NR annotation: XP_044168563.1, MMS19 nucleotide excision repair protein homolog isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0136.g11.t1

GTTAATTATCATTTAAAAGAAAGTATTGCTTGTCATTTTAAACTTTCAGGTGAAAGTAGTTTCTCAGCATCTTACTTCTCTGGTATTGGCAAACAAAGAAATTTCACTAAGTCAGACCAGCCGATCTGCACTGTCACAGCTATCCAAGATGTACCCTGACATCATTCAAACAACTTTACTTCCAACATTACAGATGCACCTTAAAGCAGAGGATGGATCTGCAATGGACACAGACAGGTCTGAACCCCACACTTCCCCTGTCAGTTATCAATGTGTTCTTGATACTCTTGCTGCTGTGTGCACCCAGGATTCTATTTTGCATGATGTAATCCCAAGATTGATTGAACATGCTCAACACATGTGTGAAGAGAATCTTGATGCGACGCAATGCAACAGAGTATTTGATTGTGTTCACAACATCATAGAAGATTCTGTTCAAAGAGACAAGTCGTCTGCTGTTTACTTCAAGAGATCTGTGGTTCCTACAATTCTGAGGGTAGCTCTTCAATCTGCTTTGAAAGAGTCAAGTGAATGTTTCATCTCTAAGGAAAGCTTGCAGAAGCTAGCAGCCATCTTAAGAACTGTGACGTGTAGCTTAGATGTGGAGGAAGCACGTGATCTCCTGAATGATTTCGTCACTTTGTATGTCGATGGAAACTCATCCTTCTTGGACAAAACATTCCAGGGAACTTTTCTTCCCTTAGAGCTAACGGCACCATGGCGACAGACTCAGCTGGTCTCGTTGTTAACAGCCACTTTATGCTCCGCAAGACGTGAGGTAACCATTCCTCGCCAGACAGAGCTAGTGCCCAGGCTTCAGTATTTGGCATGCCACTGTGATCACGAAAGAAGCGCGGAGTGTGGGGCGCAGTGTCTCGCTGGGATAATCAACAAAGCACCCGAAGGTGATGAACTGACATCGACGTTAAATGAGCTTTCAAGCCGAATATGGGAAAACAGTGACAAAGAAGGATCTCGAAAGAGAGCGACAAAAACTTGGCTTTGGCTGACCAAAGCGGTTGTGATCCGGTCTCATGCCCTGGCACCTAAATTTATCGAAATGGTTTTGAGTTTGATGAAAGACAGAGAGGTCGGTCGCTTCGCTGCGGATGGTTTTTACATCATCGTTGCAGATTTCGACGAAGTTATGAACGTTAAGATGCATGCAAACTGTCGGATGATGTATCGTCAGCGTCTTTTTATGGAAGTTTCCCAAAAGCTGACCGAAGGATTTAACTCAGCACAGCCTGAATTCAAGCATCATCATCTGTGTGCGCTGTCTCATCTGCTACGCTGGATTCCTAAACAAGTGCTGCTCTCTGAGGTCCCCAGGCTGATGCCATTACTGGTCCAGTCCTTGTCGTGTGACGAACAGAGCTTAAAGCTCTCTACACTTCACACCATGTACTCGCTTATGTTTGATGCGCCAGAAATCATTACTCGTCAGGTGACTTCGCTCGTTCCCATTCTCTTGCGGCTTTCACAGTTTCAGATTTCAATGAAAATCAGAATGGAATCTCTCAAATGTCTTGGCGCTATGACAACCTTGCCTCATCATGTGGTTTACCCTTATAAGACTAAAGTTTGCAAGACTTTAGCCGACTCAGTCGATGATAAAAAGAGATTAGTCCGAAAGGAAGCCGTAAAGTGTAGAAATAAATGGTATCTCCTTGGGAGCTCAACAAGATGACAGCGACAAGACAGTGTCAACTATTCGATTGAAGCatctgatatgacctgaggttggatagtgctatgcagcggttaaatcaataattttcaataaaattgaatcatccactgtatggtgatttacccattggttatcgctatccacttttttagaaaaagtggttgatctggccccagttgttgataggttggatgaggctctccagcgaataaatcactaccgattgaataagaaccaccaaaacctattgagttatccaTCGCCCTTTTAACAACTTGGCCTATTTGTTAATTGCGTCACAGGTGCATGTGATCACATGGTTGCCTCAGTGGTTAAAAATGTTCTTTGTCACGTGTTTTCAATTAAAGTTCGGGACAATGGTCAGACATATTGTAAAACTTTGACTCTTGAAATAACAAAACAATATAAATAAGCCCCCAGGAAACTTGAACTAATATTTCAATAGAGAAGCAACAAAGTA

Protein

Uniprot

Uniprot term	Description
Q9D071	MMS19 nucleotide excision repair protein homolog OS=Mus musculus OX=10090 GN=Mms19 PE=1 SV=1
Q96T76	MMS19 nucleotide excision repair protein homolog OS=Homo sapiens OX=9606 GN=MMS19 PE=1 SV=2
E1BP36	MMS19 nucleotide excision repair protein homolog OS=Bos taurus OX=9913 GN=MMS19 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12460	MMS19_C	RNAPII transcription regulator C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039920	Family	DNA repair/transcription protein MET18/MMS19	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024687	Domain	MMS19, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12891	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0097361	Cellular Component	cytosolic [4Fe-4S] assembly targeting complex	Interproscan
GO:0097428	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan