Gene detail

Detailed information of agem_s0136.g14.t1 in Acropora gemmifera

Genomic Location: sc0000136_pilon:145116...159625
NR annotation: XP_044168736.1, short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0136.g14.t1

CTTACATCACGTGACATGATTAACCACAGACTTGCCAACTGGTTTATTCAAAACAAAATTAAGCTGTAGAGCCACGTGGAGGTGTACGTTAAATTCATTACCAGATGGCCATGTTTCACAAGATAATGTTGTCAGGGATGAGACCCAATAGGTCATTTTTGAGTGTTATTACGCACATTAGAAGAGCCACGCCCATTTTGCATAGTCACCACTTGAGCCAGAAGGTGTCAGAGCCATTAACCATGCTCTCAGAAGAAGAGGAAATGATGAGGGATACAGTTACCAGATTTGCAACTGAAAAAATACAACCATTGGTGTCAGAAATGGACCAGAAATCTGAAATGGATGAATCCATCATCGATGGAATGTTTGAGCAAGGGTTAATGGCAATTGAAGTTGATGCAGATTATGGGGGAGCAAACTCCTCATTTTTTGTGTCCTGTCTTGTTGTTGAAGAATTGGCCAAAATCGATCCAGCTGTTGCTGTGATGTGTGATATACAGAATACTCTCATTGTCACATTGTTCCGGAAATATGGTACTCCTCAACAAAAAGCAGAGTATTTGCCTCATTTAGCGCGGAACATGGTGGGAAGTTTTTGCCTGTCGGAGGTTGCTTCTGGGAGTGATGCATTTGCAATGGAGACCAAAGCTGAAAAGAAGGGAGATTACTTTGTCATAAATGGCTCAAAAATGTGGATTTCAAATGCTGAACAAGCTGGGGTATTTCTTGTGTTTGCGAATGCTGCACCAGAAAAGGGCTACAAAGGAATTTCAACATTTATAGTGCCTAGAGAAACAGAAGGATTGTCCCTTGGGAAGAGAGAAGACAAGCTTGGAATACGAGCATCCTCAACTTGTCCTGTCCACTTTGATAATGTCAAGGTACATGAGAGTAATATTCTTGGGCAGCTTGGTCATGGTTATAAGTATGCAATAGACTCCCTGAATGAAGGACGCATTGGGATTGGAGCACAGATGCTTGGACTTGCTCAAGGCTGTCTCAACTGCACGGTTCCTTACACTCATGAAAGAAAACAGTTTGGTCAGAAGATCTGGGACTTTCAGGCTGTCAATCATCAGCTCGCGCATGTGTTCACACAGATTGAAGCTGCTAGGCTGATGGTTTACAATGCGGCACGGAGAAAAGAAGCCGGGCTTTCATTCCTGCGAGAGGCTGCCATGGCCAAATACTTCGCAGGAGAGGTGGCTGCCCTGACAACAACGAGGTGTATCGAAGTGATGGGAGGCGTCGGCTTTTCCAAGCAATATCCAATCGAGAAATTCTACAGAGATTGTAAAATCGGTGCCATTTACGAGGGAACTTCTAATATTCAGCTGTCTACAATCGCAAAGAATATGAAAGAATTTGAACCTTAACAATTGAAGACTCTTGTTATTACTATGTACCTTTTGAAGCAAGGCCAGTTATGAAAGTTAATTCTTTGGGAAAACCCTGCCAAATCCATGTGAACGAGTCATATGTGAAAGACTGTCAAGTATAAAATTAAGGCACAAACTTGCTTCGAAATTGTATCAGTAATAACGCCAAGAAAAGAGAGAAACAGAAACCAAGAAAGGCAAAACTTGGATGTGCTGTTTTTGCCAAAAGGAAATACGTCTATTTGAGTTCAATTGATGACGGTGGTTGCCTGTTAACCGCAGTCTTCGAGCGTTTGTGGAAAAGGGACGAAAAAGCGAGAATAGTACTCAACATCTGCCGTGATCAAACTCGGATATATTTAATCACAGGGCGACACTCTCATCCCGGCCCTCTATTAACAGTAGCGATGATAACGATTTTTTTATTTATGTCTCAAGGTTATCTTACAGAGTAGATTAAGTGCTCTTTTAATTTCGGAAACTGCAGATCAAATTAAGTTAAAGCGCGGAGACTAGCTGTAAATGTAGTAAGCGAAGTACATAAAGGAAAAAAAAACCTCTCTCGAAACCGAAGAACAATCCATGTATGACAACTGGAGCCACATTGTTCGAAAGTCAACGCTATCATCACGGCGTTAACAACGATATTGGCAAAAAAAACAACAGCGAATGACACTCGCTTTTAAGTTCAGGCAATGAAGAAGAAGTTCGGAC

Protein

Uniprot

Uniprot term	Description
P45954	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADSB PE=1 SV=1
Q9DBL1	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Acadsb PE=1 SV=1
P70584	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acadsb PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09478	ACADSB; short-chain 2-methylacyl-CoA dehydrogenase	EC:1.3.8.5	Valine, leucine and isoleucine degradation	ko00280	deepkoala