Gene detail

Detailed information of agem_s0155.g1.t1 in Acropora gemmifera

Genomic Location: sc0000155_pilon:5026...20094
NR annotation: XP_029211499.2, CCR4-NOT transcription complex subunit 10-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0155.g1.t1

GATCTGTTTCCTGCTTATTGAAATTTATTTGACTCTTTACAAGGCAGACAAGGCACACAATGTTTTGACAATACTGGAAAACTTGGTGTTTGGATCAACTAAACAAGTAGAGGTAATCCAAGGTGGACTGCAAGCCCAGCTTGGACCAGGANGTTGCATTGTTGATTAGCCTTCCTGACTCACTTAGATCGAGAAAGAGAGTGGCGAAACTGGTGATGATTTGGATGACATTGACATGGCTCATCTTTTGTACAATGAATCTGTCATCTACTTTCATTTACGACAGTACACCAAGGCATTACCTCTTCTTGAAAGATTATTTAAGATTGTTGAGCCGCTTGAGGAGACTCTTGGATACAAGATCTGTTTCCTGCTTATTGAAATTTATTTGACTCTTTACAAGGAAGTTGTTGTGGTCTGATTTGAATTTTTTTTCATTTAGTATAAAGCACGCCTGAACATCCTTTTGAAGTCAATGAAAGCCTGTAAGCGTGAGATCAAAACATTCATGAACACAAGCAACATGACAGCTGAAAGTCTTTTCCTGAAAAGCAACTTTGAATATCAACGGCAGAACTTTCGGAAATCCATCAAGTTGTTAAACAGTGCACCAAAACCAAATTACATTAAAGACCGAGGGCAGTCCTTGAGCACCATGTACTACAACAACTTGGGATGCATTCACTTCCAACTACACAAATACAACTTAGCAGCATTTTACTTCAGACGGGCTTTGCAAGAAAATGATAAGGCTCTTGCTTCACTGCCGCCTGTTGATAAAAATGCCCCAGTATCCAGCCGCTCTCTGGGCACACTCGGTGTTAACCGCCGCCATGAGATACTGTATAACCTAGGGATCCAGCTGCTGTTCTGTGGTCGACCTGGGGTAGCTTTTGATTGCCTGGTTGAAGCTGTTCAAGTGTACCACACAAATCCTCGCCTGTGGCTCAGACTAGCAGAGTGCTGTATTGTATCATTTCAACTGTCTGATGATTTTCGGCAAAAATGCATCAAGAAGAGTGATGTCATTCAGGATGTTGTTGGTTCAGGACCACATCGCAAAATTGTTCTTTCACCTCAAACAGATAAGCAGTATAGCTCAGAAGAGAGTAAAGGTCAATCATCTGCAATGCCAGCTTGCACTCTTGCATTTGCATCACTGTGTCTTCAAAATGCTCTGATGCTGTTAAAGAGCGCAGAGGTTTCTACAGTTCATGAATCAGAGAGTGCCCTTCTGGAAAATCAAGTGGCCAGGGAAGATGACTCTGTCAATCAAGAGATGGATGCCTCCAGTGACAATGGTGGTCTCGGCAGATCTTCAAACATACAAAGTGAGGCAAGTATTCCTGCCCCTCCTGGACCACCCGTTAAACTGCGCGAGCTTCCACATCTCAGGTGCTCCATTCTTGCCTGCAGTGCTTATGTGGCCCTTGGATTGGGAGACAATGTGATGGCCTTAGCTCATGCACAGAGACTGTTATCACAATCTAACCTCCTGGGAGCACTCAAGTTTCTGGGACATTTATATGCTGCTGAAGCTCTCATCAAACTGAGTCGCTTACCAGAGGCCATTATGCACCTGTCAACGGAAAATGTCAACAATATATCCATTGTGCCTCCTTGTGGAGCAACTGACAGTGGAGTTTTAAGTGACAGTGCTGACAAGGACAGTTCTAAACTTCACATGTGCGAGAAGATGTACTTTCCACAATCTTTAAGTGAAGCAAGGGCGTCGTTTCTGGTCAATTTAGCAGGCGTGTACAGCTTACGCAGTGAATTTGACAAAGCGCGCAAGTGTTTACAGCAGGCCTGTGCACAAGGTTATTCCAAAGAAATGTCTTCACGAATGGTGTTACTGGCCGTCTACATAGAGCTACAGAGTGGGAACGTGGCAGGTGCACTTCAGACCATCAAGAAGCATCAAGTTCTTTCAATGACCAAGGTACTGGGCAAAACCATAAAGAAGACTCGGGGAGCAGACATTTGGAAAACATAACATCATTTATTAGTTCAACTTTAATCAGTCGTTCCGTTTATCGACAAACTGAATGACACTAGCCTTGTGACTGTATTCTCCAACACAAACTTGGAAGACTGAAATTGTAGTGTAGTTCAGTTTGCTAAGGTCTAATTCATACTTCTTCTAGTCTTTGGCTCAATGGTGAGACATTTCACCATTGCGTGGCAAGTTTTAGGGGTAAAAAAAGTCCTTTGTTATGAATTGAGAAATAAAATGTCATGTTCCAT

Protein

Uniprot

Uniprot term	Description
A4IFB6	CCR4-NOT transcription complex subunit 10 OS=Bos taurus OX=9913 GN=CNOT10 PE=2 SV=1
Q6NU53	CCR4-NOT transcription complex subunit 10-B OS=Xenopus laevis OX=8355 GN=cnot10-b PE=2 SV=1
Q9H9A5	CCR4-NOT transcription complex subunit 10 OS=Homo sapiens OX=9606 GN=CNOT10 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07719	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013105	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR039740	Family	CCR4-NOT transcription complex subunit 10	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12979	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030014	Cellular Component	CCR4-NOT complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12607	CNOT10; CCR4-NOT transcription complex subunit 10	-	Messenger RNA biogenesis	ko03019	deepkoala