Detailed information of agem_s0177.g29.t1 in Acropora gemmifera

Genomic Location: sc0000177_pilon:514920...527882
NR annotation: XP_015750785.1, PREDICTED: uncharacterized protein LOC107330734 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q00403Transcription initiation factor IIB OS=Homo sapiens OX=9606 GN=GTF2B PE=1 SV=1
Q4R3J5Transcription initiation factor IIB OS=Macaca fascicularis OX=9541 GN=GTF2B PE=2 SV=1
P62915Transcription initiation factor IIB OS=Mus musculus OX=10090 GN=Gtf2b PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21056ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF00382TFIIBTranscription factor TFIIB repeatDomainInterproscan
PF04434SWIMSWIM zinc fingerDomainInterproscan
PF08271TF_Zn_RibbonTFIIB zinc-bindingDomainInterproscan
PF15299ALS2CR8Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007527DomainZinc finger, SWIM-typeInterproscan
IPR000812FamilyTranscription factor TFIIBInterproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR048324DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR013150DomainTranscription factor TFIIB, cyclin-like domainInterproscan
IPR013763DomainCyclin-like domainInterproscan
IPR013137DomainZinc finger, TFIIB-typeInterproscan
IPR029309FamilyCalcium-responsive transcription factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47456PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0070897Biological Processtranscription preinitiation complex assemblyInterproscan
GO:0017025Molecular FunctionTBP-class protein bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan

TOP