Detailed information of agem_s0188.g21.t1 in Acropora gemmifera

Genomic Location: sc0000188_pilon:295786...320555
NR annotation: XP_029202253.2, uncharacterized protein PB18E9.04c-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9JIL9Nibrin OS=Rattus norvegicus OX=10116 GN=Nbn PE=1 SV=2
Q9DE07Nibrin OS=Gallus gallus OX=9031 GN=NBN PE=1 SV=1
Q9R207Nibrin OS=Mus musculus OX=10090 GN=Nbn PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF00498FHAFHA domainFamilyInterproscan
PF16508NIBRIN_BRCT_IISecond BRCT domain on Nijmegen syndrome breakage proteinDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR000253DomainForkhead-associated (FHA) domainInterproscan
IPR040227FamilyNibrin-relatedInterproscan
IPR043014Homologous_superfamilyNibrin, second BRCT domain superfamilyInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR032429DomainNibrin, second BRCT domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12162NIBRIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0007095Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0030870Cellular ComponentMre11 complexInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan

TOP