Gene detail

Detailed information of agem_s0205.g8.t2 in Acropora gemmifera

Genomic Location: sc0000205_pilon:171743...188215
NR annotation: XP_044174739.1, DNA-directed RNA polymerase III subunit RPC2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0205.g8.t2

gggattgttCTCGTTCGATTTTGAGATATTCAAACACGGCTTATTGAACGGTGCTCTTTTGGTCGTTTTGTTTTAGCTGGATATGTAAACGAGTTCGTTTCAATTTGTCCTAACCACCAGCACAGATTTGTGAATATTGCATCAGATGGAGGGCGCGTGTGCAGACCTTACATTATCGTGAAAAATGGAAAGCCCAAAGTACAAGACAGGCACATTCAAGAACTGGTGCAAGGATTTCGGAGCTTCGAGGACTTCTTACATGAAGGACTGGTTGAATACTTAGATGTCAACGAAGAAAATGACTGCTCGGTTGCCCTTTACGAAAAGGAGATAACGCGAGAGACGACGCATCTAGAGATTGAACCTTTTACTCTGCTTGGTGTTTGTGCGGGACTGATTCCCTACCCGCATCACAACCAATCGCCTCGAAATACTTATCAATGTGCTATGGGCAAGCAAGCCATGGGTTCTATTGGCTACAATCAGCGTAACAGAATTGATACGCTGCTGTATTTCTTGTGTTATCCTCAAGTTCCTTTGGTTAGAACCAAGACAATCGACTTGATCCAGTTTGACAAGCTTCCAGCAGGTCAAAATGCAACGGTTGCTGTCATGAGCTATAGCGGATATGATATTGAGGATGCCCTCATTCTGAACAAGGCTTCGCTGGACCGAGGGTTTGGTCGTTGTTTAGTGTACAGGAAGCAGAACTGTTTATTGAAGCGATATGCAAATCAGACATTTGATCGCGTTATGGGTCCCAGTAGGGATGCCAGCACAGGAGAAGTGATCTGGAGGCACAGAGCTTTAGATGCTGACGGCATTTGCGCACCCGGTGAAAGAATTGAGAACAAACAAGTTCTTGTCAACAAATCAATGCCTATTGTTTCACCTACTGGACTTCAACCGGGAACTCCAGGCCAACCTCCTCAACCAGAGTACAAGGATGTCCCTGTGTCGGTTTGGTCGTTGTTTAGTGTACAGGAAGCAGAACTGTTTATTGAAGCGATATGCAAATCAGGAACTCCAGGCCAACCTCCTCAACCAGAGTACAAGGATGTCCCTGTGTCATACAAAGGACCAAGGGATATTTATGTTGAGCGAGTTCTGGTGACCTCAAATGCCGACGAGGCATTTTTGATAAAAATTCTCGAAAGACAAACACGGAGGCCTGAGATTGGAGACAAGTTTAGCAGTCGACACGGACAAAAAGGCGTATGTGGCTTAATTGTGAACCAGGAGGACATGCCATTTTCTGATTTGGGTATTTGTCCGGACATTATCATGAATCCGCATGGATTCCCGTCTCGAATGACGGTCGGTAAACTCATTGAACTGATGGCTGGTAAGGCTGGAGTCTTGCACGGGCATTTTGGATACGGAACAGCATTCGGAGGTGACAAGGTGGAGGATGTTTGTAGTGCTCTCGTTGAGAAAGGTTTCAATTACGTGGGAAAGGAGTTTGTAACCTCTGGGATCACCGGGGAGCCATTAACAGCTTACATCTACTTTGGTCCTGTGTATTATCAGAAGCTCAAACATATGGTTTTGGATAAGATGCACGCCCGTGCAAAGGGTCCGCGAGCTGTTTTGACGCGCCAACCGACTGAAGGTCGCTCAAGGGACGGCGGTTTACGACTCGGTGAAATGGAACGCGATTGTTTGATAGCTTATGGTTCCAGCATGCTTCTCCTAGAAAGACTGATGATCTCCAGTGACGCGTTTGAAGTGGATGTGTGCAGCGAATGTGGCCTGATGGGATACTCTGGATGGTGCCATTACTGCTCATCATCTCACAATATTTCAACTCTGAAGATACCTTACGCTTGCAAACTTCTTTTCCAAGAACTTATGTCCATGAACATTGTTCCTCGTCTGTCACTCAAGCATTACACGGATGAATAACACCGAGTGAGAAAAGAAACCTACTTCAGTCTCGGAAATGACATCAGATGGTCTGAAAGACCAACCACATACGTCAACTGTTTTTCTAACCAAAATATAAGACATTAATGTACAAAAACTGAATAAATTGATGTAACATAT

Protein

Uniprot

Uniprot term	Description
Q9NW08	DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2
P59470	DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2
P25167	DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=Polr3B PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00562	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04560	RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007121	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007120	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR007641	Domain	RNA polymerase Rpb2, domain 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan