Gene detail

Detailed information of agem_s0222.g10.t1 in Acropora gemmifera

Genomic Location: sc0000222_pilon:123816...126264
NR annotation: XP_015768593.1, PREDICTED: transcriptional regulator Myc-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0222.g10.t1

CTAGGCTTTGAATGAATGACTTTGAATTAGCGTGAGGTGTAAAACTTTTCACATTAGCTCGTTGCGCGCTCTCGAGATAGTGTCGGAGCTTTATTTGTTGTTAACCAGTGTCAAAAACTCCGACAAAGCGAAAACAGGGCAATTATAAGCTATTTCTGCCGAGTCATCTTGTACGAGTTTATGAGAGGAGAAAATGACAGAGGACTGCTTGATTTTAGAGAGCTTTGAGAACGAGTTTGATCCACTTCAGGCATCGCTATTCAAAGATTTAAGTGATGATTCACCAGAGTCGAAGAACAAGGGTAAAGAGGCAACTGATGATCTCTGGCAGAATTTTTCATTTCCGCCAACACCACCCATTTCGCCGGCTTGTTCCCCCCCGTACGACACCACAGATGAAGCAAGAGAACAGCCAGTTTGTCTAGGAATATCTGACGAAGAATTCTCTCTGGACGACGAGTGTTCTCTGTATTTCCAATCCAGTGACTTAAAGGATATATTGATCAAAGACTGTATGTGGAATGGAGCGGCCTTCGATAAATCAATCGACAGGAAACAACGATTTCATTCAAAAATGGAACCGAATCGACTCTTATCACAGACTCCACCACTTAGTGAATCTGCAGCCAGAATTTTGAGTGTTGATCCATCAGAAATTTTTCCCTTCCCACTAAGCACGAGTCCTGGTAGTGAAATTCGCGAAGATATGACTGATCAGTTGGATTCTGAAGAAGAGGAAGTCGAAGTTGATGTCGTTACTATAGAGAACTCAAAACgagagcagaaagccgaaatcatggaaactgaagaggagaaaACTTGTGAAATAAGCCCGGGTGAAACATCGATTGATGAACCACCATGTACCGAAACATCGAGCGTCGAATACAAACAAGACTTCCCTGACAACGAAAAATCGGATTTTGTGACTAAGATGAGAACTCGTCGGCACAGGAAAGCCGTTGTTCTATCAAGCGAGGGGTTGAATAACAGGGACGGAAAAAAGGTACTCAAAAACATCAGCAGTTCTGGAGAAAGCGATGAATCTGAAAATGACAGTGAGTTTACGCGAGCAACTCACAATGTTTTAGAAAGAAAGAGGAGAAATGACTTGAAACTGAAATTTCAAAAATTGCGCGACTGTGTGCCGGAACTAAAGGACAACGAAAGAGCACCCAAAGTCTCAATCCTGAGAAAATCATGGGAGTACATTAGTCACATAAAGCAAGAGGAAATAAAACTACTGGCTGAGCTGGAAAAACAAAAGAAAATGAACGCAGTTTTACTAAGAAAGCTACTGGCCTTGAATCAAACCAGCTAGAGAGTTCTCAGGAACTTCAGTTTGCCACGCTTAGGCTCCCCACAGGGAGTGTTTTTATCAATTCCCCAGCGAAAGAAACGCTATTTTAAAAGTGAGCATTTGATTCTCACCTTATTCATCTAGTTTCACTCGCAAGTCTCAGTGCGATTTAATGACAAAGAATTACATTTTGTTGGTCACGGTACAAAAATTACTGAAGCTAGTTTTCAGACGTCGCAATTGTAGTGGAATCGCTCAATTGTACATACGCGCAGTTAGAATTAATTTTGAAGATACTGCTTGTAAATAGGTTTCTAATAATTATTGTGCTGTTTCATCCTCGTTCGAATTGAAACCGGCTTTGTGGATGCTCAACAAAGGCATTAGAATTATCAACGTAGTATTACAAAAGAATGGTACGAACCATTTTTGGTAGGAAACTTAAATAAAATCTAGAAAGAAAACGGAACAGAGACTGGTAACTGTTATTAAATGTTCGAATTTATACTCCGTGTAAGGAAAATTTCCAATTTTTTTGGTAGAAAACGCCGAAGTAGTCAAATTCTTTTGTCACACGTTACTCTCATTCAAACCGAGTGACACTGAAAATGAATGGGCGGCAAATTTGCATTTGTGTGTTGACTGAGGCTATAGACTAAACTGCATAAATTTCAAATCCATTAACCTATTACTTGGCTTGTGTCGCAATTATATAAAACTGTTGGAAAATAATAAATAATCAACTAGGTA

Protein

Uniprot

Gene family

Uniprot term	Description
P22555	Myc proto-oncogene protein OS=Marmota monax OX=9995 GN=MYC PE=2 SV=2
A2T7L5	Myc proto-oncogene protein OS=Pongo pygmaeus OX=9600 GN=MYC PE=3 SV=1
Q9MZU0	Myc proto-oncogene protein OS=Galeopterus variegatus OX=482537 GN=MYC PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF01056	Myc_N	Myc amino-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR002418	Family	Transcription regulator Myc	Interproscan
IPR050433	Family	Myc family transcription factors	Interproscan
IPR012682	Domain	Transcription regulator Myc, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45851	MYC PROTO-ONCOGENE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan