Genomic Location: sc0000223_pilon:285139...307705
NR annotation: XP_015764893.1, PREDICTED: putative RNA-binding protein 15 [Acropora digitifera]
| CDS | ||||
| agem_s0223.g17.t2 | ||||
| Transcript |
| agem_s0223.g17.t2 |
| Protein |
| agem_s0223.g17.t2 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| F6UA42 | E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis OX=8364 GN=uhrf1 PE=3 SV=2 | |||
| E7EZF3 | E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio OX=7955 GN=uhrf1 PE=1 SV=1 | |||
| B6CHA3 | E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis OX=8355 GN=uhrf1 PE=2 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | ULD|UBL|NEDD8 |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_Other |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02182 | SAD_SRA | SAD/SRA domain | Domain | Interproscan |
| PF12148 | TTD | Tandem tudor domain within UHRF1 | Domain | Interproscan |
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00240 | ubiquitin | Ubiquitin family | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF07744 | SPOC | SPOC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029071 | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR045134 | Family | UHRF1/2-like | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR003105 | Domain | SRA-YDG | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR021991 | Domain | UHRF1, tandem tudor domain | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR000626 | Domain | Ubiquitin-like domain | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR016194 | Homologous_superfamily | SPOC-like, C-terminal domain superfamily | Interproscan |
| IPR036987 | Homologous_superfamily | SRA-YDG superfamily | Interproscan |
| IPR012921 | Domain | Spen paralogue and orthologue SPOC, C-terminal | Interproscan |
| IPR015947 | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR010912 | Domain | Spen paralogue/orthologue C-terminal, metazoa | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14140 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0010216 | Biological Process | obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0061630 | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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