Detailed information of agem_s0244.g18.t1 in Acropora gemmifera

Genomic Location: sc0000244_pilon:420171...440805
NR annotation: XP_044177135.1, LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q91ZW3SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus OX=10090 GN=Smarca5 PE=1 SV=1
O60264SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens OX=9606 GN=SMARCA5 PE=1 SV=1
P28370SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 OS=Homo sapiens OX=9606 GN=SMARCA1 PE=1 SV=3
Gene familySubfamily
Transcription Factors FamilyMYB

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09111SLIDESLIDEDomainInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF09110HANDHANDDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044754DomainIsw1/2, N-terminalInterproscan
IPR036306Homologous_superfamilyISWI, HAND domain superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR015195DomainSLIDE domainInterproscan
IPR017884DomainSANT domainInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR015194DomainISWI, HAND domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45623CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11654SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5EC:5.6.2.-
Chromosome and associated proteinsko03036deepkoala

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