Gene detail

Detailed information of agem_s0246.g22.t2 in Acropora gemmifera

Genomic Location: sc0000246_pilon:253926...262751
NR annotation: XP_044184594.1, ERI1 exoribonuclease 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0246.g22.t2

ATGGCTTCAAAAGGCAATAAGACCCTGCAAAAGTTGTCTGGCAACTCATTATCTACAAAAGAATTAGCAAGAAGCTTTGGCCTTGTCAAGAAAAGGCCATCATCCTCGTACCGGGAAAAAGGTCAAGAAAACAAAGCTAAAGCTGGTCAGTGTTTTGCATATCTGATAGTGCTTGACTTTGAATCAACTTGTTGGAAGGACAAAAAACTGAACTATGGCCCTGAAATAATTGAGTTTCCAGCAGTACTTCTAAACACTTCCTCTGGAGTTCTAGAAGCTGAATTTCACATGTTTGTCCAGCCTAGTGAACACGGGAAACTTAGTGAGTTTTGCACTGAGCTCACAGGAATTACACAGTCTCAAGTAGATGATGCTGTTCCAATTGGCACCTGTCTGATGCTGTTTGGACGCTGGCTACAAGAGACTAGAGATGCTAAAAGCATTAAATTTCCTTGTGATCTTGGGCAAAAGAAGGGACAAGAACAAACAATGGAGATTGCAGACAAATTGTGCACGTTTGTGACATGGTCAGACTGGGACTTGGGGAATTGCCTGAAGAATGAGTGTTATAGGAAGCAGTTGAGAATGCCACAGCCAATGAGAAGCTGGATTGACTTGCGAGCAACTTATAAGAATTTCTACAGCCGTAAGCCACAAGGATTAGCCGGTGCTCTGCAAGATCTGGGAATCCAGTTCACGGGAAGAGAACATTCAGGTCTTGACGACGCTCGCAACACTGCTCGGCTTGCGTGGAGGATGATTTCAGACGGTTGCCTCATGCAGATAACAAAGAGTCTTGATGGGGTGGAGGAAAAGCTTTGGAGTGATTTTCTCAAAACTCTTCATTCGCCGATTCAGAACGGTAATTCAGGACAATGTGACAAGTCAGCACGGGTTGTGGCATACAGAAGTGATAACAATCCTATTTTTGAAAGCTTGAATTTTTCAACACCTCGTACAAGGATATCCAGCAAGCCTGGAGCGGACGAGATTGCTGAAGGAAAACGGAAGTCAACTGCATTGGAAACTTTTTGCTCAAACGCTAAAATTAGAAAGATTAAGCAGAAATTGCCGGATCTCGGAGGAAGTGTACTCGTAAATAATAGACAAGAGAGGATTGTAAGGGAAAACAAGACACCACAGGTCAATGAGAACGCGATTGTAACGCTTGTTTCTGGTACGGCCATGGCTTGTTCCGCACTATCAAACGCTGACAATGAGCAAGACAAGCTGGCGAATGAAAAGATGGCATCACAGGACTATGGATGCGTGGTTTCGACGAATAACACAATCACGTCTCTGTTAAGTCCAATTACAAGTTTAACCAAGGGATCCAAAGATCGTTATGTGAGTCACTTGAAAGGTGAAACATTCAAGTCTTGTACTTCTGGATTTAAAATAAGAAGCGGGCTTGTCAAACAATCCGTGTGCCGCAATCAAAACCCGCATTTGTCAGGTCATAACTTACGATCATCGAACGACATTGGACGAAAAGAAGCATCAAGTTACGATCATCCCTGCAAGGCTTCCAACATTGAGCCTTGTACTTCGAACATTCCCTTGTTTAGACTGCCACTGAATAAATCATCTCTAATTGATGAATCAACAAGCGAAGGCCTTGACAAGACTTTAAACCCCAAAGCATCTCTTGTTATCAAACGTAAAACAACAGTTTCAACGTCCAGAAATGAAACTTTGGCACCCTCATACTCTGCGAGGACAAATAATCTAATTAAAAGCTTTACTCCACACCACGTAAAAACTGCCCCAGTCTCCCTTCCCGTCAATTGCTTTAACAGAGGGCGAACCACGCCACCGCTGTGCTACTGTGGGCGTCGCACCCGACGTAAGTCCGTCGTCAATCCGGGACCCAATCAGGGAAGAGCTTTCTATTCGTGTTCAGCCAATCATGACCGCTGCAAGTCAACCTTGACTGTTGGTCAAAAGGCTCCTAAACCTGGTTGTAACTTTTTCCGTTGGGAGGTGCGTTTATGA

Transcript

agem_s0246.g22.t2

TAACATACGTGAAAACATAAAACTAATAATATCAACAATATTGGCATGGTTTACTGAAAATATGGCTTCAAAAGGCAATAAGACCCTGCAAAAGTTGTCTGGCAACTCATTATCTACAAAAGAATTAGCAAGAAGCTTTGGCCTTGTCAAGAAAAGGCCATCATCCTCGTACCGGGAAAAAGGTCAAGAAAACAAAGCTAAAGCTGGTCAGTGTTTTGCATATCTGATAGTGCTTGACTTTGAATCAACTTGTTGGAAGGACAAAAAACTGAACTATGGCCCTGAAATAATTGAGTTTCCAGCAGTACTTCTAAACACTTCCTCTGGAGTTCTAGAAGCTGAATTTCACATGTTTGTCCAGCCTAGTGAACACGGGAAACTTAGTGAGTTTTGCACTGAGCTCACAGGAATTACACAGTCTCAAGTAGATGATGCTGTTCCAATTGGCACCTGTCTGATGCTGTTTGGACGCTGGCTACAAGAGACTAGAGATGCTAAAAGCATTAAATTTCCTTGTGATCTTGGGCAAAAGAAGGGACAAGAACAAACAATGGAGATTGCAGACAAATTGTGCACGTTTGTGACATGGTCAGACTGGGACTTGGGGAATTGCCTGAAGAATGAGTGTTATAGGAAGCAGTTGAGAATGCCACAGCCAATGAGAAGCTGGATTGACTTGCGAGCAACTTATAAGAATTTCTACAGCCGTAAGCCACAAGGATTAGCCGGTGCTCTGCAAGATCTGGGAATCCAGTTCACGGGAAGAGAACATTCAGGTCTTGACGACGCTCGCAACACTGCTCGGCTTGCGTGGAGGATGATTTCAGACGGTTGCCTCATGCAGATAACAAAGAGTCTTGATGGGGTGGAGGAAAAGCTTTGGAGTGATTTTCTCAAAACTCTTCATTCGCCGATTCAGAACGGTAATTCAGGACAATGTGACAAGTCAGCACGGGTTGTGGCATACAGAAGTGATAACAATCCTATTTTTGAAAGCTTGAATTTTTCAACACCTCGTACAAGGATATCCAGCAAGCCTGGAGCGGACGAGATTGCTGAAGGAAAACGGAAGTCAACTGCATTGGAAACTTTTTGCTCAAACGCTAAAATTAGAAAGATTAAGCAGAAATTGCCGGATCTCGGAGGAAGTGTACTCGTAAATAATAGACAAGAGAGGATTGTAAGGGAAAACAAGACACCACAGGTCAATGAGAACGCGATTGTAACGCTTGTTTCTGGTACGGCCATGGCTTGTTCCGCACTATCAAACGCTGACAATGAGCAAGACAAGCTGGCGAATGAAAAGATGGCATCACAGGACTATGGATGCGTGGTTTCGACGAATAACACAATCACGTCTCTGTTAAGTCCAATTACAAGTTTAACCAAGGGATCCAAAGATCGTTATGTGAGTCACTTGAAAGGTGAAACATTCAAGTCTTGTACTTCTGGATTTAAAATAAGAAGCGGGCTTGTCAAACAATCCGTGTGCCGCAATCAAAACCCGCATTTGTCAGGTCATAACTTACGATCATCGAACGACATTGGACGAAAAGAAGCATCAAGTTACGATCATCCCTGCAAGGCTTCCAACATTGAGCCTTGTACTTCGAACATTCCCTTGTTTAGACTGCCACTGAATAAATCATCTCTAATTGATGAATCAACAAGCGAAGGCCTTGACAAGACTTTAAACCCCAAAGCATCTCTTGTTATCAAACGTAAAACAACAGTTTCAACGTCCAGAAATGAAACTTTGGCACCCTCATACTCTGCGAGGACAAATAATCTAATTAAAAGCTTTACTCCACACCACGTAAAAACTGCCCCAGTCTCCCTTCCCGTCAATTGCTTTAACAGAGGGCGAACCACGCCACCGCTGTGCTACTGTGGGCGTCGCACCCGACGTAAGTCCGTCGTCAATCCGGGACCCAATCAGGGAAGAGCTTTCTATTCGTGTTCAGCCAATCATGACCGCTGCAAGTCAACCTTGACTGTTGGTCAAAAGGCTCCTAAACCTGGTTGTAACTTTTTCCGTTGGGAGGTGCGTTTATGACACAAAGCAAATCCTGGGCTTGTTAAATAAACAATGGTCAAGGGA

Protein

Uniprot

Uniprot term	Description
Q5BKS4	ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1
Q5HZL1	ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1
A8K979	ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06839	zf-GRF	GRF zinc finger	Domain	Interproscan
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010666	Domain	Zinc finger, GRF-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR047201	Domain	ERI-1-like, DEDDh 3'-5' exonuclease domain	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR051274	Family	3'-5' Exoribonuclease	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23044	3'-5' EXONUCLEASE ERI1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18417	ERI2; ERI1 exoribonuclease 2	EC:3.1.-.-	Chromosome and associated proteins	ko03036	deepkoala