Gene detail

Detailed information of agem_s0264.g21.t1 in Acropora gemmifera

Genomic Location: sc0000264_pilon:269157...303475
NR annotation: XP_029213549.1, probable U3 small nucleolar RNA-associated protein 13 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0264.g21.t1

ctctctattaacaagtagaagccgacttaattttcgtttcaaagagagagcgcgttgccgttcattcatggcgctaaatactaagggcgagtgatatgtcagcagctgattggctatctcaaacacacgtgaaaaattatcgtaattttaaccgtgtggtggtacggtttttctgagtggtggaaatccctattaagcacttcagtttgtgtaaGCTTTTTTTCTTTCAACTGCGCAGAGCTGAGAAGGGCAAAgtttgctcccttcctcaaacaatagagatcttacgtaacaggacagctggaagactcaagacggcaaaatgacgaaaaaatctcgcacaagaacggtaatgtacagtctcacgcgagattttttcgtcattctgcgccgtcctcagtcttccagccgccctgttgcgtaagctcccAAATACGCGAGTTGGCCACATTAGATTGTCATAGAGGAAGTTATGTGGTTTTTTGCTTCATCCTTAGTAAAGAAACAATTTCGTAATAGCTTGTCATTCTGTTTTGTAAATTGTGTGGTTTTGAAGAAAATCCAGGCAAAATGCATGATGTACAAAATGAATGTTTTTTTTTGTGTGTGTGTGTAGTTGCGTTGCATAATGCATTGTGTCAGTGCAGCATTTGCGTGTGATCTTTGTTGGACAGTTTATGGAATTATTAAAGTGTGGGATTATTCAGCATGTGAGCCAGGGAAGTTACTTCGCACTTCTCGAGAACATGATGGATGGGTCACAAGCTTTCTCTTTTGGGCAGATGCTAAGCTTCTCTTTTCAGCTGCCAATGATGGCATTATCATTGCATGGGGATCTGGTGGAGCTGTACATGACAAGATTCCAATTGGCTCCCCCGTGTATTGTATGTCTTGGAATGCAAGAAGACATCAGATAGTTGCAGCAATTGGTTGTACAGTTCAAGTGTTCAACATGAGAGATCCAAGCAGAGAAATTATTGGGCATGTAATTGACCAAAAAGCCTTCATTTCTAAAGAGCACACAGATGTTGTGAAGTGTGTCGTTTGTTTTGAATCAAGAGTTTATAGTGGAGGCTATGATCAAAAGTTTATTGTGTATGATTCAACTTTTTCCTATAAGGGGAACAAGAGCTTGTCACTGGTGGCAAAGATTAACAAAGCTCATGATGCTGGTATCATTTGCATGTGTCTTGCACGAGATTCAGATAACAATACATGGGTACTCACAGGAGCATTTGACAAAGTTGTAAAAGTGTGGTCCCAAGATGGACAAGTTATGCACAAGTTTGATGGATTTAGGTACCAACAACAGGCGGCATTTAATATTTTGGAAATACAACTCATCCGGTTGTCTAACAACATTAAAGAACAGGTGTGCTATGGAGTCGCTTACATACACAAGAAAGGTTCCTTTGTTAATATTCAGTGGTGGAAGTAACGGAAATATTTCGAAATGGGAAAGATTACAGTCGAATAACTTCATGTACAGCAAAGAATTGCTTTTGCAAAGCGAGGGAAAGGCCCGCTTAGCCGCTCAAATAGCCTCACGTTACGACTGGCGGAGTCCTAAGAGGGGTAGTGAAGGGAGATCCAAACCATCTTTCCTCAACGCTATTAGTCAGATTCCTTCGGCTTCGGAACACACAAGCAACATTTCCTTGTTGAGGTCCATATTCGTGGAGGACCTCGATTTGCTCATTGTTGCATCAGAAGACAATAATATTTATGTGTGGGGTTTCGACGAGAATGCTGTGAAAGTTCTGGAAAACATGAAGCCTGTCGATGAAAGCCTGATTTATAAATATGCGATTCTGCTTGGAGGCAAGACCCTTAAACCAGTCACAAACGATAATGAGGCGTCCAAAGAACATGATTCAGTGACGAATCGAGTGGCGGGATTTATTTGTAGGCATGTGTTCACAGGACACAGTAGTTGTGTCACAGGACTGGCAGCCGTGGGTCGACAGGCTGGCTTCAATTCAACGTACCTGATTAGTGCTGGCTGGGATAGAAGAATCTTCCTCTGGGATTTAGAGGCAGCTAACTTTCACGATACATTCCGTAACAGCGGTCCAAGTACATTTGAAAACAGCGAACTTGCTTCAGATGGGATAATCATGGACTTGACTTACAGTCTAGACAGGAATGAGTTTGCTTATGCTTCGTCGGACAAACTAGTGTATATCAGACGGTTTTCAGATCGAGGAGCCGACATGACATTGTCAGCCGTTTTACAAGGACACGAGGCCGAGGTAACCCAGGTTCAATGGAATTCAGTGCTGGGCAAATGGATCACGGGTTCAGAGGATGGCACAATTCGAGTATGGAGGGCAGATGGGATGGCCTGTGACTTGGTTCTTAGCGCTCAAGGAGCTGTGTCTGCCTTGTGTATCGATCAGTTAAACGGCTGCATTGTGGCAGGAGTACAGGAGATAATAAGAGTTTATGATCCCGAGACGAAAAAAATTGTCCAGAAGAATCTTGGCCACACTGATTCCGTGCGCAGCATAGTTCACATTCCCGAACGAAGCCAGTATGTCTCGGCATCATGGGATAAAACGGTTCGAATATGGAACGCTTACAAGAAGACTCGTAAGAAAGCTGCCAAGGACACAACAGAGCTCTCTGACATGTGAAGCGATTCCTACATCTGTGTGAATTCGTAATCATTTGTGTGAAATATTCTTACGTTCATTACTGTACATAGATGTAAAGTAAATATTTGTTCTTTTT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR053299	Family	ASTRA complex-associated WD repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44156	SUPERNUMERARY LIMBS, ISOFORM B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan