Gene detail

Detailed information of agem_s0304.g3.t3 in Acropora gemmifera

Genomic Location: sc0000304_pilon:26306...127523
NR annotation: XP_044176440.1, inner nuclear membrane protein Man1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0304.g3.t3

CGTTCGCCATTTTGTTGTTTAGAGTGCGTCGCGTTGAGTTTTGACTGAGGGATCTACGCTTGCAACGAGAGTCCATCGGAAGAATTGTTCGAAAACGTCATGTGCACATACAGCACTAAAACCGTGTGCCATTAAAATGTCTGTGATCGCTTTCTGTCTCGAGATTTTATTGATCAAAGTTTCACTTTGGAAGGAAAAAGGCGCCAAACCAAGTGTTTTTACCAAGCGATCGTTCCTCATCACGAAGCTCATTAAAGAAGGCAAACAGCAGAGTGATATGAGATTTCAGACTTCAAAAATTGTTCCGCTTTTGTGATTGCAGTTTTGTGTCACTGAATTTCGGAGGTGTTTGTGAACGGCGCTGTGCTACATATTTGTGAGTCGTAGATCTTGGAGGCCTTTGGCCGATTGGAGGTCACGTTTACAATACAAGTTATCGGTGGCCTGGTGTTTGTTTATTTCGTTGTACGTCAAAGATGGAGGAGAGAAGAACAAGAAACCAGAATGATGTACCAGTTTGTGGAGAAAATTATTGAGATCTTACGAGAGCACCATCAAGCCAGTAAAACTGACAAGACCTTGTTGCCTTATCGTCCAATTCCTCATGTGAGAGACATGCTGATTCCTCCATCTGACAGGCAAAGGCAGCTTGGTGCCTGGGATAGAGCTGTGCGATTTCTGAGTAGCAACGAGTCTCGCATTCGAGTCGAAAGCCAAAGAATCGCTGGGGAAGATTTTGAAGTTTGGAGGTGGATCGAAGTTGCTACGCCCAAAGACCACAGCCCAAAATCGGCACGTATTTTCCAAGACGTGTTCGCAGAGCCAGAAGGATCCTACAGTATAGATGGAGTTTGGCGCACTAGCTTTACTGCATTTGTCAACACCAAGTATTGGTGTTACCGCATCATAACAGCCGTCCTCGGAATTCCTACCGCGGTGCTCTGTGGGATGTACTTTGCTTGTCTCAGCTTCGACTACATTTGTGATGAAGAAGACGCTGGGCCAAGCCTCTCGAGTACTTTCACGGAATCGGGTAAATTGAGGTTAAAACGAAGAGGACTGATGAACAGCAATGATGGTGAGCCTGAGGAAACATCCTCCCTGAGTACGCAACCTTCTCCTTTGGGGCGCAGAAGTTATGAGCGTGTGCCAAGTTTAATGGATAACTTTTCTGAGAGGACGTTATATACAACGGAAGGAAATAGCGGAGAGTTTTCTGATCAAGATGGACAAGTGCCCCATCAATCAATAAGCAATTCATGGCGCAGAACTCCAAATCGCGATCGAGAAGAGAGGGAAAGACAATTCCTGACAGTGCGTGCTTCCTCAACCTACGAAACAAAGGAAAGCGCGAATTTTGATTCCAAATTAAACTCGACACTTCGAGAGAGACCAGCTGGAGCCGAAGTCTTGAAAGGCAGCTCAACGTGCTCTTCAACAGGAAAGATCGTATTGGTGATAAGTGGAATCTGCGTCGCTCTGCTGTTGTGCGCCGCTCTCAAGTGGCACTTGAATTACCAACAGCCGCAACTAGGGCTACTTGATTGCGGATATACCAACTTTGGAAGTAGGAACTTGTCTTGGAAATCATTTGAAAAAAGAGTCAGGAATGATAATGGCGACATGATTGTGAAGATACCAACTTTGGAAGTAGGAACTTGTCTTGGGAATCATTTGAAAAACAAATCAGGAATGATAATGTTATTTGATGAGAATGACACAGTAACAAATGATATCAGTAAGGTGAAATGGATTGATTGTGCTGTTTCAATGAAACCTTTATTGTGCCGCATCAGGGAAGCAATGTCCCGGTTGGCTTATCTATCATCTGGTATTGGTTGTGTTATCGGTGGCCTGGTGTTTGTTTATTTCGTTGGCAACAAGCGTGGAAAATACTGGCAGGGACAAGCGTTTGAAAACTTTCAATCAGCTGTAAACCCACCTGTTATTAGTCCAACACCATGTTTGAAGATACGAAACATGTTTGACCCCGCTGTTGAAACTGAAGATGGCTGGCACGTTATGATCCAAGATGCCATTTTGGAGAAGTGCATCGAGAACGGAGCTGGCGTAGTCCATATTGCCGTTGATAAGAGCTCTGTCGAGGGATGTGTTTATGTCAAATGTGATACTCATCACTCTGCGGGGTTGGCCTTTCGAAGTCTTCATGGCTGTTGGTTTGATGGTCGACTTGTTGCGGTGAAATACCTCACCCTTAAGAGATATCACCAGAGATTTCCAGTTGCCATGGAAGCCACTGAACGGATCAATCCATCTGGGACCTCCCCGTCGTCACTTGTTGTATTTGATCCCGCTACTGGAGATGAGGATGTGAACGATTCTGATATTGAGCTTTAGATTTGTATTGTCTGTTGCTGATTGGATGGCCAGTGTACATCGGCGATTTGAAAATTAAAGGGGTTGGAATTCTCGGGTTGAAGGTAATCACGCGAGAAAAATACCACGCTGGTATGTTCCAGTTGTAGCTCGCTTGATTGGCTGAACAAAGTGCAAGTGATCGAAGAAACAAATCAAAGGAAAGAGAAAGCTTGGAATGTGTCGATCAAGATGTTTCATTTGAATGATCACATTATTAAAGACTCAGTATTACAAAATGATTTTTAAAACTAAAAGAACACCTTTAGTGCAGTGAAAATTGTGAACGACAGTTCATAGACGCGAAAATAAGGAACCACCTAAATCTGTCACAAAACTGCACAACAAGAAATTACAACACGTTAGCATGGAATTTCCCGTTTAAGTTTTGATAGGCTAGAAAACTCTTGCAGTACCAAAGACGCTCAACTTTGTTACAAATAACTGCCGCCTCCGCGA

Protein

Uniprot

Uniprot term	Description
Q9Y2U8	Inner nuclear membrane protein Man1 OS=Homo sapiens OX=9606 GN=LEMD3 PE=1 SV=2
Q9WU40	Inner nuclear membrane protein Man1 OS=Mus musculus OX=10090 GN=Lemd3 PE=1 SV=2
P51637	Caveolin-3 OS=Mus musculus OX=10090 GN=Cav3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15519	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan
PF01146	Caveolin	Caveolin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034394	Domain	MAN1, RNA recognition motif	Interproscan
IPR041885	Homologous_superfamily	MAN1, winged-helix domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR052277	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR029123	Domain	Splicing factor RBM39, linker	Interproscan
IPR001612	Family	Caveolin	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0070836	Biological Process	caveola assembly	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan