Gene detail

Detailed information of agem_s0312.g3.t1 in Acropora gemmifera

Genomic Location: sc0000312_pilon:68796...77819
NR annotation: XP_044168981.1, Werner syndrome ATP-dependent helicase homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0312.g3.t1

atggaaattggtgatcgggccggagaaggacgagcctatggaaatctcggtaatgcttccttttcactgggcgacttcagaaatgccattgagtatcatgaaaaacacttggaaattgcaaaagaaatcggtgattgggctggagaaggaggagcctatggaaatcttggaaatgattacgactcaatgggtgacttcccaaaagccattaagtatcatgaaaaacgtttgagaattgccaaagaaatcagtgatcgagctggagaaggacgagcctatggaaatctcggtaatgcctacaggtcacagggtgacttccaaaaagctattgagtatcatgaaaaggacttgaaaattgtaatagaaatcggtgatcgggccggagaaggaggagcctatggaaatctcggtaatgcttacaggtcactgggtgacttccgaaaagccattgagtataatgaaaaaggcttgaaaattgcaatagaaatcggtgatcgggccgctgaaggacgagcttatggaaatctcggtagcgcttacacgtcaatgggtgactttcaaacagccattgagtatcatgaaaaagacttgaaaattacaatagaaattggtgatcgggcaggagaaggaggagcctatggaaatctcggtaatgcttaccggtcactgggtgacttccgaaaagccattgagtattatgaaaagcacttgaaaattgcaatagaaatcggtgatcgtgccggagaaggacgagcctatggaaatctcggtaatgcttaccactcactgggggacttccgaaaaccttttgagtatcataaaaaactcttgaaaattgcaattgaaatcggtgatcgagctggagaaggagtagcctatggaaatgtcggtaatgcttacatttcagtgggtgacttccgaaagggcattgagtgtcatgaaaaacgcttgaaaattgcaatagaaatcggcgatcgggccggagaaggaggagcctatggaaatcttggtaatgtttaccactcactgggtgacttccgaaaagccattgagtatcatgaaaaacacttgaaaattgcaatagaaatcggtgatcgggccggagaaggaggagcgtatggaaatctcggtattgcttacttttcacagggtgatttccgaggagccattgagtattatgaaagggacttgaaaattgcaatagaaatcggtgatctggccggagaaggaagggcttatcacaatattggtaacggatactgtgggcttggacggtttgacattgcggtgggtaattttgtttccgctgtgaatgtgtggaatactttgagatctctattgaagtctgaaggtaactggaaaatgaaatttcgtgatctgtatgagatgacgtacactttcttatggagatcatcgctaagaattggaaagatcagcgaggctttggttgctgctgatcaaggacgagcgcagactttgtatgacaatttgttagttcaatatggactcgcttcaccctcatcatgtaccacatttgactccaaggggacaacaattcgcctcttcacagagctttcttcacaaattatctttctcgcactcgaaggacttaggatcaacatttggtttttgagcaggggacagaaagttacatttcgacaagggatgctagaggctgatatcacagatgaagatcccatacgcgccttactacaagcagctttaagaaaaatcggagctgaggttgaagtgagatgcgaagatcgcacatttaatgaaatagacaatgaatgtgtgtctagcaaagaattatgcaaggaggtggaaaagtcatgtcattcttcagagaatccttttaggccattttatgatgcagttattggtccaattgttgacttacttggatctcaattcgacgagttggtcattgtttctgatggtgcactgtgcttaacgccatgggccgcaattgttggatcgattaggattcgcactgtgccctctctcaccagttatcaattgatctcacgtgtacccgagggctatcacaagaagacagtggcgcttttggtcggaaatccgtgcttaaaggagttggagaaacctctacccgacttaccttgtgctcaagaggaagtagaaatgattgcatcaattcttaacaccaggcccttaacagggagagaggcaacaaaagctgaagtgataaaacgcatgtcgtcagttggtttaattcacattgctgcccacggaaacaagcgcactggagaaattgccttgtctccaaaccttggatggacttccaagttccctgaaaaaaaagatttcattttgaaaatgtccgatgtagaagcagctaatctccgagctcgtcttgttgtcttaagttgctgtcacagtggacgaggcagaatcttgaaggTGGTTCTTTTTTTCAGGCTTGCTGGGCGATTCCAGAACAGGTTAAATAAGAATGTGAGATCATCTCAAGGAACTAAGCGCAGCAAATTCCTTAAAAAAGCACAAGTTTTTGTGATAGACGATGCGTCTTCTTGTGATAAACTTCTGCAGTCTCATCGTTCAAAATATGCTTTCAAAATGAATTACATTGGCATAGACTGTGAGTGGGTAAACAAGGAAGGCCAAGTGAATGCACCTGTGGCGTTACTGCAGATTGCAACTCCTCTGTGTGACTGTTTTCTTGTTCGTCTGTGTAAAATGGACGGTCAAATACCGCAGACTGTCAAAGAGATTTTGGAGGACAAGACTGTTCTTAAATTTGGTGTAGGTATCCAGGATGATGCAAAAAGATTGTGGAAAATGTTTCGTATCCATGCACGAGGCTGTGTCGACCTGAGACATGTTATTCAAAGAACTCAGTTGGAGAATGAATACCAAAGTTGTGAGAAGACTGGCCTCAATTCCTTAGCTGAGAAAATATTAGGTGTTAGGATGGATAAATCCTGGAGAATTAGCAGCAGTGATTGGGAAGCCGACAAGTTCACGACTCGACAGATAGAATATGCCATGAATGATGCTCTGGTTGCAAGCCATATTTTCCTGAGGTTGGTGGAAAGAAAAATTAATGCACTGAGCCAAGATTTAGATGTTTTTTTGCCTTTGGAAAAACGGGGTAATAGTTTGACCGTTCAAGATGCTTGTGTTCAAGATAAAACCATGAAACTCTCTTTATCAATGTCAATTGAACATCAACGAAAAAACAATTCTGATTTTGCCTTGAATCTATCAGAAAACCTGAAACATTTCCAAAAATCAGCTGCATGTTACAGAGAGCATGTTGATAGATGCACATCGAAATTCTCAGAGAACAGAAGCTCAAATCAGACGGGTATGATTCTGAAGGGAAATATCACTGACAAAAAGACAAAACTCAAGAATGAAAGATCTGTGGTAAAAGAAGACAGTGATTTGTGTTCTGATTCTCAGATCTGTGCTAAACCTTTTCAAGACCTAGTGAGTGGTGCTGATTATTATAAGACTACAGTAGATCTCAATAAGTTTGAGTCCAAAGAGATGATGGGATACCTTGCAAGAGATAAGGTCATCAGTCTCTTTGCCCACCCTGGGTTTACTCAAACAGCAGGCTCCCTCTGCCAGAGTGTGCTTGACCTACAATTTAAGAAAAGAAAAAAGAATGCTGTCACAAAAAAGAAGGAGAGCAAAGAGGAATCCACTTCTAGGAATCCAAAGAAGTCACAGATATCTGGCAAAAGAAATGCAAAAGAGAAACCACCTCTTTCCTTGAACTGTATGAACAACAAGACCTGA

Transcript

agem_s0312.g3.t1

catgaaaaagacttgaaaattgcaatggaaattggtgatcgggccggagaaggacgagcctatggaaatctcggtaatgcttccttttcactgggcgacttcagaaatgccattgagtatcatgaaaaacacttggaaattgcaaaagaaatcggtgattgggctggagaaggaggagcctatggaaatcttggaaatgattacgactcaatgggtgacttcccaaaagccattaagtatcatgaaaaacgtttgagaattgccaaagaaatcagtgatcgagctggagaaggacgagcctatggaaatctcggtaatgcctacaggtcacagggtgacttccaaaaagctattgagtatcatgaaaaggacttgaaaattgtaatagaaatcggtgatcgggccggagaaggaggagcctatggaaatctcggtaatgcttacaggtcactgggtgacttccgaaaagccattgagtataatgaaaaaggcttgaaaattgcaatagaaatcggtgatcgggccgctgaaggacgagcttatggaaatctcggtagcgcttacacgtcaatgggtgactttcaaacagccattgagtatcatgaaaaagacttgaaaattacaatagaaattggtgatcgggcaggagaaggaggagcctatggaaatctcggtaatgcttaccggtcactgggtgacttccgaaaagccattgagtattatgaaaagcacttgaaaattgcaatagaaatcggtgatcgtgccggagaaggacgagcctatggaaatctcggtaatgcttaccactcactgggggacttccgaaaaccttttgagtatcataaaaaactcttgaaaattgcaattgaaatcggtgatcgagctggagaaggagtagcctatggaaatgtcggtaatgcttacatttcagtgggtgacttccgaaagggcattgagtgtcatgaaaaacgcttgaaaattgcaatagaaatcggcgatcgggccggagaaggaggagcctatggaaatcttggtaatgtttaccactcactgggtgacttccgaaaagccattgagtatcatgaaaaacacttgaaaattgcaatagaaatcggtgatcgggccggagaaggaggagcgtatggaaatctcggtattgcttacttttcacagggtgatttccgaggagccattgagtattatgaaagggacttgaaaattgcaatagaaatcggtgatctggccggagaaggaagggcttatcacaatattggtaacggatactgtgggcttggacggtttgacattgcggtgggtaattttgtttccgctgtgaatgtgtggaatactttgagatctctattgaagtctgaaggtaactggaaaatgaaatttcgtgatctgtatgagatgacgtacactttcttatggagatcatcgctaagaattggaaagatcagcgaggctttggttgctgctgatcaaggacgagcgcagactttgtatgacaatttgttagttcaatatggactcgcttcaccctcatcatgtaccacatttgactccaaggggacaacaattcgcctcttcacagagctttcttcacaaattatctttctcgcactcgaaggacttaggatcaacatttggtttttgagcaggggacagaaagttacatttcgacaagggatgctagaggctgatatcacagatgaagatcccatacgcgccttactacaagcagctttaagaaaaatcggagctgaggttgaagtgagatgcgaagatcgcacatttaatgaaatagacaatgaatgtgtgtctagcaaagaattatgcaaggaggtggaaaagtcatgtcattcttcagagaatccttttaggccattttatgatgcagttattggtccaattgttgacttacttggatctcaattcgacgagttggtcattgtttctgatggtgcactgtgcttaacgccatgggccgcaattgttggatcgattaggattcgcactgtgccctctctcaccagttatcaattgatctcacgtgtacccgagggctatcacaagaagacagtggcgcttttggtcggaaatccgtgcttaaaggagttggagaaacctctacccgacttaccttgtgctcaagaggaagtagaaatgattgcatcaattcttaacaccaggcccttaacagggagagaggcaacaaaagctgaagtgataaaacgcatgtcgtcagttggtttaattcacattgctgcccacggaaacaagcgcactggagaaattgccttgtctccaaaccttggatggacttccaagttccctgaaaaaaaagatttcattttgaaaatgtccgatgtagaagcagctaatctccgagctcgtcttgttgtcttaagttgctgtcacagtggacgaggcagaatcttgaaggTGGTTCTTTTTTTCAGGCTTGCTGGGCGATTCCAGAACAGGTTAAATAAGAATGTGAGATCATCTCAAGGAACTAAGCGCAGCAAATTCCTTAAAAAAGCACAAGTTTTTGTGATAGACGATGCGTCTTCTTGTGATAAACTTCTGCAGTCTCATCGTTCAAAATATGCTTTCAAAATGAATTACATTGGCATAGACTGTGAGTGGGTAAACAAGGAAGGCCAAGTGAATGCACCTGTGGCGTTACTGCAGATTGCAACTCCTCTGTGTGACTGTTTTCTTGTTCGTCTGTGTAAAATGGACGGTCAAATACCGCAGACTGTCAAAGAGATTTTGGAGGACAAGACTGTTCTTAAATTTGGTGTAGGTATCCAGGATGATGCAAAAAGATTGTGGAAAATGTTTCGTATCCATGCACGAGGCTGTGTCGACCTGAGACATGTTATTCAAAGAACTCAGTTGGAGAATGAATACCAAAGTTGTGAGAAGACTGGCCTCAATTCCTTAGCTGAGAAAATATTAGGTGTTAGGATGGATAAATCCTGGAGAATTAGCAGCAGTGATTGGGAAGCCGACAAGTTCACGACTCGACAGATAGAATATGCCATGAATGATGCTCTGGTTGCAAGCCATATTTTCCTGAGGTTGGTGGAAAGAAAAATTAATGCACTGAGCCAAGATTTAGATGTTTTTTTGCCTTTGGAAAAACGGGGTAATAGTTTGACCGTTCAAGATGCTTGTGTTCAAGATAAAACCATGAAACTCTCTTTATCAATGTCAATTGAACATCAACGAAAAAACAATTCTGATTTTGCCTTGAATCTATCAGAAAACCTGAAACATTTCCAAAAATCAGCTGCATGTTACAGAGAGCATGTTGATAGATGCACATCGAAATTCTCAGAGAACAGAAGCTCAAATCAGACGGGTATGATTCTGAAGGGAAATATCACTGACAAAAAGACAAAACTCAAGAATGAAAGATCTGTGGTAAAAGAAGACAGTGATTTGTGTTCTGATTCTCAGATCTGTGCTAAACCTTTTCAAGACCTAGTGAGTGGTGCTGATTATTATAAGACTACAGTAGATCTCAATAAGTTTGAGTCCAAAGAGATGATGGGATACCTTGCAAGAGATAAGGTCATCAGTCTCTTTGCCCACCCTGGGTTTACTCAAACAGCAGGCTCCCTCTGCCAGAGTGTGCTTGACCTACAATTTAAGAAAAGAAAAAAGAATGCTGTCACAAAAAAGAAGGAGAGCAAAGAGGAATCCACTTCTAGGAATCCAAAGAAGTCACAGATATCTGGCAAAAGAAATGCAAAAGAGAAACCACCTCTTTCCTTGAACTGTATGAACAACAAGACCTGAAAGGGTCAGCCTTTCTACTTAAGATTGCCACATTGGTTCATTAGTGACGTGGAAAAGGTCAGCTTTGTTTAGAAATAAATCTTTTGCTCATGTGTTTTGTTACACTGCATTTTAATATTTTGTCCATAAGTGCTATTAGAAAGGTAAAGAGGTTTGTTTTGAATCTGTGTGCAGTGTTTATTTCTCCCTGAATAAAAAAAAATGAATATC

Protein

Uniprot

Uniprot term	Description
Q9VGN7	Exonuclease 3'-5' domain-containing protein 2 OS=Drosophila melanogaster OX=7227 GN=Exd2 PE=2 SV=2
Q5UQM4	Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R431 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF01612	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF12770	CHAT	CHAT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562	Domain	3'-5' exonuclease domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR024983	Domain	CHAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000132	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala