Gene detail

Detailed information of agem_s0325.g18.t1 in Acropora gemmifera

Genomic Location: sc0000325_pilon:235985...242775
NR annotation: XP_029204965.1, vacuolar protein sorting-associated protein 4B-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
D0FH76	Vacuolar protein sorting-associated protein 4 OS=Bombyx mori OX=7091 GN=VPS4 PE=1 SV=1
O75351	Vacuolar protein sorting-associated protein 4B OS=Homo sapiens OX=9606 GN=VPS4B PE=1 SV=2
Q5R658	Vacuolar protein sorting-associated protein 4B OS=Pongo abelii OX=9601 GN=VPS4B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF04212	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007330	Domain	MIT domain	Interproscan
IPR045253	Domain	Vacuolar protein sorting-associated protein 4, MIT domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR036181	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan