Detailed information of agem_s0331.g7.t1 in Acropora gemmifera

Genomic Location: sc0000331_pilon:54496...58543
NR annotation: XP_015777006.1, PREDICTED: homologous-pairing protein 2 homolog [Acropora digitifera]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q63ZL2Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006543 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07106
all species →		TBPIPTBPIP/Hop2 winged helix domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR010776
all species →		DomainHomologous-pairing protein 2, winged helix domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15938
all species →		TBP-1 INTERACTING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000709
all species →		Biological Processmeiotic joint molecule formationInterproscan
GO:0000794
all species →		Cellular Componentcondensed nuclear chromosomeInterproscan
GO:0003690
all species →		Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0007129
all species →		Biological Processhomologous chromosome pairing at meiosisInterproscan
GO:0010774
all species →		Biological Processmeiotic strand invasion involved in reciprocal meiotic recombinationInterproscan
GO:0120230
all species →		Molecular Functionrecombinase activator activityInterproscan
GO:0120231
all species →		Cellular ComponentDNA recombinase auxiliary factor complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0331.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP