Gene detail

Detailed information of agem_s0349.g8.t1 in Acropora gemmifera

Genomic Location: sc0000349_pilon:105746...115721
NR annotation: XP_044184266.1, peptide chain release factor 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0349.g8.t1

CTTGACAAAAGCGCGGCGGAATGATTTTGAAGTATCGGTAAACGTTTCTCTATAGCCATAGTTTTTCAGTTGATTAGAAATTTTGAATGCTTCATCAGTTTTTCAAAGGACTTAATGTACGGGTTGTTGGGAGTGGTGGGGCCTTCCGCAAGTCATGGTCCCAAATATTAGTGACACAAATCAGGTGGAGATCACAATTATTAATTGAGACCCTTGAGCCTCACTTGAAAAACCTTGTGAAACAGCATGCTGAGATTACCAACAAGTTATCATCAACTGGGGGGGAGATGCCACCTGCAAGCAAAATGAGAGAATTATCTAAACAACTTTCCAGGCTGTCACCTATTGTTCATCTAACAAATCAAATTGAGCAAAAACAAAAGGAAATTCAACAGTTAAATGACCTTATATCAGAGTCAAGTGGAGAGCTTTGGAAAATTGCTGAGGAGGAAAAGCGACAGGCTATAAGTGATAAAAAAGAATTGGAGGATAACTTGCTAATGTCCCTTGTTCCTCGGGATGATGATGATGAAAACAATGCTATTTTGGAGCTAAGAGCAGGTACTGGTGGAAAGGAAGCATCTTTGTTCACAAGTGAGATGTTTGTTATGTATCAAAGGTTTGCAGCCTCTAAGAAGTGGAAGTTTGAAATTCTGAACATGAGCAAAAGTGATCAGGGTGGAATTAAGGAGGCAGCTGTTAGAGTGAGTGGAAGTGGCGTGTATGGAATAATGAAGTTTGAAACTGGTGTCCACCGGGTGCAGAGAATTCCTCTGACTGAGACAATGGGTCGCATTCACACCAGCACAATGACAGTGGCAGTCTTGGCACAACCTGAGGAGGTCGATGTAGTAATTGATCCCAAAGATCTTAAAATTGACACATACAGATCTTCAGGAGCTGGTGGTCAGCATGTAAACACAACAGACAGTGCAGTGCGCATTACCCATATACCGACTGGAATAGCCGTTGCTTGTCAAGAGGAAAGGTCCCAAATTAAGAATAAAAGCAGAGCTCTCCAAGTATTGCGAGCGCGGTTGTACGACCTTGAGAGGAAAAAAGTTGATTCAGAGAGAGCTGAAGCCCGCAGAAAGCAGATCGGGGGTGGAGAACGCTCAGAAAAAATCAGAACCTACAATTTTCCACAGGGCCGAGTCACCGACCACAGGATAGGAATGACCATGCAGGGCCTGGAGCTGTTCCTTGATGGCGGAGATAAACTTGACGAACTTATTTTGGCTTTACAGTCACAACATGAAGCCGAAGCTCTTCAGGAACTCACAAGCCAATTTACTACCGGAGCTGGAGAAAAACAACGTAGATGACAAGATCTGATAATATTAGAATGCGATGAGTTTGTATTTCATATATCTGTATTCGAGACGACTGAGGTTTGACTCTGCGCATGTGCTAAAGTTGAGCGATGTATCGATATTTTTTAGAACTCACAAAGTGTCTTGCGCACGCAAGATTCCAAAGCTTTCACGATAATCCAATTTTCTCAAAATCGTTTTGTTATTCAAATTTTTATCTTCGTTTATTTCTTTGTAAACGCGTGTCTGTGGCGGTGAAAATAGTTGCCTACGTTATGTTAGGCGGCATCGAAAACAGAtataccccgttcgttttgataaacagatttaataagactggccgttcacactgcggatgcgtttaaaaaaagccactaaaaccatgtttaagaaaactgcgtcgcgaggtagtttaacaatcgtgtttaataagacacattcaaaatggcggaagagtttgtcagcacaaagaaatcttcctgtgacttgaatagtgtggagacgaaaatatccagctccagttaaaatcatgcgcaagaaaaaagcctatatggatagaaattgcgccacatcttcgagctgcaggctacgaagacagagacgacggcagctttaagacacgaattcacaccctgataagcgcctatagaagcaacaaaaacgaatgcgccaaaacgggaaatgccacaccaaagaagaagccgactttcttcgacgaagtggacgagtttttgtcaagcgttgttgtcagctcttgttgttcggtgtgaacggtatgatcatcaattaaacctggtttcattaaacgttgtttaattagacatgttttgttggtgtgaacggATCATAAAACGGTTTGACAAACTATTTAGTTCAGCAAATTGTGAGGCTCCCAAGTAGTTCGTCAAATAAAACATTTTTTAAGTGAGTattaaaatttaaacattcaattaaaattagaattGGGAG

Protein

Uniprot

Uniprot term	Description
B3CQD1	Peptide chain release factor 1 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=prfA PE=3 SV=1
A5CCS8	Peptide chain release factor 1 OS=Orientia tsutsugamushi (strain Boryong) OX=357244 GN=prfA PE=3 SV=1
Q2W6V3	Peptide chain release factor 1 OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=prfA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00472	RF-1	RF-1 domain	Family	Interproscan
PF03462	PCRF	PCRF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005139	Domain	Peptide chain release factor	Interproscan
IPR004373	Family	Peptide chain release factor 1	Interproscan
IPR000352	Domain	Peptide chain release factor class I	Interproscan
IPR045853	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR050057	Family	Prokaryotic/Mitochondrial Release Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43804	LD18447P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006415	Biological Process	translational termination	Interproscan
GO:0016149	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0003747	Molecular Function	translation release factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02835	prfA, MTRF1, MRF1; peptide chain release factor 1	-	Translation factors	ko03012	deepkoala