Gene detail

Detailed information of agem_s0398.g1.t1 in Acropora gemmifera

Genomic Location: sc0000398_pilon:7662...32825
NR annotation: XP_015780012.1, PREDICTED: uncharacterized protein LOC107357893 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0398.g1.t1

ggacgaagcactgttCTTGGGGAAGATGCAATATGGATTCAAGATACCCCGATAGAATGCCCCAATCTCTAAAAGAATTACAAGAATCGGGCCAAAAAGTGTTCATTCCATTCGTCAAACCATGGCATGATCTTgaacgatgcaagaaatgggttaatgcttgctctagaaagaactttacgactgaaagtatcaccaagaactcgtatatttgtgctcttcattggccaaaacagaaaggacccacagaagagttccctgatcctgtgaaagctaatcttACAACTGAGGAAATGGAGAAAAGGTGTCGTAACAGAAAAGCACCGACGAGACGAGAGTTCGAGTCGACTTCTAATGGAAAGAAAGCCAAAACTCTAAGCCACCAAGGCAAGATCCAATCATCTTTTCTTGATCTGGATGACGTTCCAGAAATTATACAGGATATGAACAAAGAAATAATGACTGAAAATGACAAAGCTACTCAAACAGATGTTTCAAAGTACTTTTTGGCTTGTCAGATTGCAAACAGAGTCGAACGAGTGCTCCTTCGAAATCAGACGAATGTCTCCTCAGAACATGTAAGAACTCACTTTCGTTCGCAAGTTcacgttgacgagtgcagAAGCAAACCTGAGATTATCAAGCTAGAACACAATCTTGAAATCGGTGACCTAGACGGAAAAGGAAGGGCCAGTGGAGGCCTCGGTAATGCTCATGACTCACTAAGTGATTTCCAAAAGGCCATTGAATATCATGAAAATGCTTTCAAAATTGCAAAAGAAATCGATGATCAAGAAGGAGAAGGAGTAGCCTATGGAAATCTCGGTAATGCTTTCTTTTCATTGGCTGACTTTCGAAAAGCCATTGAGTGTCATGAAAAACATTTGAAAATTGCAATAGAAATCGGTCTTCTAGGCGGAGAAGGAACGGCTGatggaaatatcggtaatgcttaccatgcactggctgactttcagaaagccattgagtatcaccaaagagcccttgaaattgcaatagaaatcgctgatcgagaaggagaaggattggcctatggaaatctcggcaatgcttgcaactcattgggtgacttcctaaaagctcttgattatcatgaaaaacacttgcaaattgcaagagaaatcggtctccgagccggggaaggaacggcctatggaaatctgggttatacttaccgttctctgggtaacttccgaagagccactgaatatcataaaaaagatttaaaaatcgcaaaagaaattgatgatcgggccgaagaaggaacggcctatgaaaatctcggtaatgcttacgattcactgggtgactatcgaaaagccattgactatcatgaaaaagatttgaaaattgctaaagagatcGgaggtcgggccggagaaggaagagacaatggaaatctcggtaatgcttaccagtcactaggtgactatcgaaaagccattgagtatcatgaaaaaGatttgaaaattgcaaaagaaatcggtgatcggaccggagaaggaagagcctatggaaatctcggtaatgcctccaagtccctaagtgactatcgaaaagccattgactatcatgaaaaacgtttGaaaattgcaatagaaattggtgatcaggccggagaaggacgagcctatggaaatcttggtagtggctacgatttactgggtgactatcaaaaagccattgagtatcaTgcaaaacgtttgaaaattgcaaaagaaatcggtaatcgggccggagaaggacgagcctatggaaatctcggtaatacctacgtttcactgggtgactatcgaaaagccattgagtatcatgaaaaacgtttgaaaattggaaaagaaattggtgatcgggtcggagaaggacgagcctatggaaatcttggtaatgcctacgatttactgggtgactaccaaagagcctttgagtatcatgaaaaacatttaaaaattggaaaagaattcggcgagtgggccggagatctagaatgaggagcctatgaaaatctggttactgcttagctgttactggaagactatGACTATGTCTTCATCATGTAGCCACAGTGTTCACAAATGATCATATCTGTGCATGTTCCTTGGATTATATCTTTGCTACAGTGGACACACTCTAAATAATTAGTTATCTTCTGT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05485	THAP	THAP domain	Domain	Interproscan
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan
IPR006612	Domain	THAP-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000132	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan