Gene detail

Detailed information of agem_s0418.g4.t1 in Acropora gemmifera

Genomic Location: sc0000418_pilon:90706...96100
NR annotation: XP_015760436.1, PREDICTED: uncharacterized protein LOC107339633 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0418.g4.t1

ATGAAGAAGAGCTCAATCTATCTACTGGAGCCGCCTCTTGATGAAGAGGGAATTCTTCGAGTGGGAGGTCGTTTGAGAAACGCACCGCTGTCTGAGAAAGCTCGGCACCCGGTTATTGTGCCTAAGAATCACCATGTGTCGAAACTTGTTGTGCGGCTAGCTCATGAATTTCAGAGGGGACACTCTGGGAAAGAGTACGTACTTGCCCTCACTAGACAGAAACTTTGGATCGTTGGTGCTAGGCCGCTGATCAAGCGGGTCCTGAAGGAGTGTATGGTGTGTAGAAAGCTCATAGGAAATCCACAGGTTCAACGAATGGCAGATCTTCCCTTTGACAGGGTAACtccaggcaagccaccattctcgttcgtgggagtggactgtgtcggcccttttgtggtgaagaggggccggactcaaatcaagcggtacggctgcttatttacatgccttactacgcgagctgtccatatcgagaagcttgacagtcttgaagctgattcttttatcaatggctttgtgagattttgtgccagaagaggtgtacgagagaaggttaggtcagacaacggcactaattttgtcgcgggagagaaagaattgcgcgaggcgatgcggagttggaataatgacggcaaggtgaaagcccatttgttgcagaaagagatcaagtgggaatttaatccccccgcagcctctcatatgggaggcatatgggaaaggcaaatcagatcggtcaggaaggtgctgaatatcattctgagagagcagaccttagatggcgaatgcttatcaaccttgttctgtgaggtggaaTCGATCGTTAATGGAAGACCGTTGACAGTCTCATCTGATGACCCGAATGATGAAAGTCCTCTGACGCCAAGTCATTTGCTGCTCCTTCGTGGAGGACCTGACCTACCCCCTGATCAGTTTGAAAAGAGTGATATCTACGGAAGGCGTTGGAGACATGTTCAATTTCTCTCTGACCAGTTCTGGAAACGCTGGGTACGTGAGTATTTACCTATTTTGCAATTACGCAGGAAATGGTTGACCCCAGAGAGAAATTTGCAGATCGGAGATGTTGTGCTCATCATGGGAGAGAACACTCCCCGGAAGAACTGGCCGATGGGGCGTGTAATCCAGACCTTCCCGGGAAAGGACGGACTAGTCAGGACTGCCCAAGTGAGGCCAAGTTGGTCCATCTTGACCAGACCAGTAGCCAAGCTGTGCCTATTGGAAGCTGTAGatgttttcagctctagtatgtggtcggatctccgggctgcggttccccagggatccagtgctttacaatctcttgcgagttctcttccggatgttgcgttggctagcagagcacccagtacctcctccaagtatttttcctcctacaacaggtggaggtcttgggcacgagaacatggcctgacagtttttcccgcttctccgtttcacttcgctatctatctgcgtcatttaatgactggggcgaagacggcatctcccctagagtcagcggttcacagcattacctggtttcaccagctaggtggcgagccgtctccttctgatcaTCCGTTGGTGAAGAGTACTCTTGCCGGTGCGCAGCGTGTCCTGGCCCGTCAAACAATCAAGAAGGAGCCTATCACAGTCTATCAGTTAGAGCAGTTAGTTGCCTCTAAGGCGCACTCAATGGCCTCTTTGTATAACATTCGTTCGGTTGTTATTTGCTTACTAGCTTTTGCTGCCTTCCTCAGATTTGACGAGCTTGCTAAGCTTGTTCGTTCCGATGTTAGGATCGAAGATGACATGTTAAAGTTATTTATTCAATCGAGTAAAACTGATCAGTATAGAGATGGAGCTTGGATTGTTGTAGCCTCTTCCAGGAGAGCAACTTGTCCGGTTGCTATGATGATCCGTTATTTAGATAGAGCTGGGCTTTCCTGCGATAGCCCTTTGTTTTGCCAGCTTTCCAAAACTAAAAGTGGTTATAAGCCTAGATCTAAAGGTTTAAGCTATTCTAGGTTAAGAGAGTTAGTGCTggaggcttttaaagatattgttcctgatatttctgccattggtacgcatagccttaggagtggcggggccacggctgccgcaaatgctggcgtaccagatcgactctttaagcgtcatggccgttgggctagtgaatgggctaaggacggatatgtgcaagattctttatcttctcgtttgtcggtttctaaggctttaggtatttAG

Transcript

agem_s0418.g4.t1

AAAAGGGTGTAGCATGGCTGCTTCGGTGCAAGAACTGGTTACGAACGAAGACTGGAAAAGCAGAAAGGCCACCTTCAGTGTCAGCTGATCCTCTGGCTCCGTTGCAGCTGCAGGCTGCGGAGACAGCTATTGTCGGATTTTTCAGCGCAAGCACTTCAAAGAAGAATTGAAAGCTCTACAAATCAAAGGGGGCTGTTATGAAGAAGAGCTCAATCTATCTACTGGAGCCGCCTCTTGATGAAGAGGGAATTCTTCGAGTGGGAGGTCGTTTGAGAAACGCACCGCTGTCTGAGAAAGCTCGGCACCCGGTTATTGTGCCTAAGAATCACCATGTGTCGAAACTTGTTGTGCGGCTAGCTCATGAATTTCAGAGGGGACACTCTGGGAAAGAGTACGTACTTGCCCTCACTAGACAGAAACTTTGGATCGTTGGTGCTAGGCCGCTGATCAAGCGGGTCCTGAAGGAGTGTATGGTGTGTAGAAAGCTCATAGGAAATCCACAGGTTCAACGAATGGCAGATCTTCCCTTTGACAGGGTAACtccaggcaagccaccattctcgttcgtgggagtggactgtgtcggcccttttgtggtgaagaggggccggactcaaatcaagcggtacggctgcttatttacatgccttactacgcgagctgtccatatcgagaagcttgacagtcttgaagctgattcttttatcaatggctttgtgagattttgtgccagaagaggtgtacgagagaaggttaggtcagacaacggcactaattttgtcgcgggagagaaagaattgcgcgaggcgatgcggagttggaataatgacggcaaggtgaaagcccatttgttgcagaaagagatcaagtgggaatttaatccccccgcagcctctcatatgggaggcatatgggaaaggcaaatcagatcggtcaggaaggtgctgaatatcattctgagagagcagaccttagatggcgaatgcttatcaaccttgttctgtgaggtggaaTCGATCGTTAATGGAAGACCGTTGACAGTCTCATCTGATGACCCGAATGATGAAAGTCCTCTGACGCCAAGTCATTTGCTGCTCCTTCGTGGAGGACCTGACCTACCCCCTGATCAGTTTGAAAAGAGTGATATCTACGGAAGGCGTTGGAGACATGTTCAATTTCTCTCTGACCAGTTCTGGAAACGCTGGGTACGTGAGTATTTACCTATTTTGCAATTACGCAGGAAATGGTTGACCCCAGAGAGAAATTTGCAGATCGGAGATGTTGTGCTCATCATGGGAGAGAACACTCCCCGGAAGAACTGGCCGATGGGGCGTGTAATCCAGACCTTCCCGGGAAAGGACGGACTAGTCAGGACTGCCCAAGTGAGGCCAAGTTGGTCCATCTTGACCAGACCAGTAGCCAAGCTGTGCCTATTGGAAGCTGTAGatgttttcagctctagtatgtggtcggatctccgggctgcggttccccagggatccagtgctttacaatctcttgcgagttctcttccggatgttgcgttggctagcagagcacccagtacctcctccaagtatttttcctcctacaacaggtggaggtcttgggcacgagaacatggcctgacagtttttcccgcttctccgtttcacttcgctatctatctgcgtcatttaatgactggggcgaagacggcatctcccctagagtcagcggttcacagcattacctggtttcaccagctaggtggcgagccgtctccttctgatcaTCCGTTGGTGAAGAGTACTCTTGCCGGTGCGCAGCGTGTCCTGGCCCGTCAAACAATCAAGAAGGAGCCTATCACAGTCTATCAGTTAGAGCAGTTAGTTGCCTCTAAGGCGCACTCAATGGCCTCTTTGTATAACATTCGTTCGGTTGTTATTTGCTTACTAGCTTTTGCTGCCTTCCTCAGATTTGACGAGCTTGCTAAGCTTGTTCGTTCCGATGTTAGGATCGAAGATGACATGTTAAAGTTATTTATTCAATCGAGTAAAACTGATCAGTATAGAGATGGAGCTTGGATTGTTGTAGCCTCTTCCAGGAGAGCAACTTGTCCGGTTGCTATGATGATCCGTTATTTAGATAGAGCTGGGCTTTCCTGCGATAGCCCTTTGTTTTGCCAGCTTTCCAAAACTAAAAGTGGTTATAAGCCTAGATCTAAAGGTTTAAGCTATTCTAGGTTAAGAGAGTTAGTGCTggaggcttttaaagatattgttcctgatatttctgccattggtacgcatagccttaggagtggcggggccacggctgccgcaaatgctggcgtaccagatcgactctttaagcgtcatggccgttgggctagtgaatgggctaaggacggatatgtgcaagattctttatcttctcgtttgtcggtttctaaggctttaggtatttAGTTCTCTCGTTTGTACCGCTTTTATTGATTCTAGTTTCTGTTTAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan