Gene detail

Detailed information of agem_s0555.g2.t1 in Acropora gemmifera

Genomic Location: sc0000555_pilon:44576...58433
NR annotation: XP_015780806.1, PREDICTED: uncharacterized protein LOC107358730 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0555.g2.t1

ATGCCAAGGTCCCAGGTCATACAAGAAGGAAAGAAGTTGGTGTTAAGTTGTCACACCCGGGGATTATCAGATATGCGGTATCGGTGGGTTAAAGATGATGTTGAAATCCCTGGGGCTAATCGTCCTGACTTGGTATTAGAACCAGTGCGAACGCATGATTTTGGGATGTATTTTTGCCATGTGTGGGACAAGAGTGGTTCAGTTACCTCACTTGCTGCCGACATTGACGTGTTTCCACGGACTAACAAAAGGTTTAAAGGCTTACACGAACTCAACGAAGAGACAAAGCAAGCCTTCATTGATCTACTTAGCAAGAAAAGAATCCCTGGGCTTGCAACATGGAAGCAAGTGGCTCGGAGATACGGGATGAGAGAAACAGAAATATCTCTTTTAGACAAAGAGAAAGTTCCCGCTGCTGCCCTGTTTCAAAAACTTTTATCACTGGGGCCTAATCTAACGGTCTATTATCTCTGCAAAACGTTCAAAGAAGCTGGTCTCAAACAAGACGTCGCAAAAGCAGCAGCTGAAGCCAGCACAAATGCAGTCTTGGATTTGTCACTTTGTACAGGCGCATTTTCCATATCTCTCAAGATCGACAATGTGTGGCTAGCAGGGGCTGTGACCTTGGGTGCATTGTCGTTAGGGGCTTTTTATTTGTCTTGCAAGGGGCCCACAGAGGAAGCTATAAGAAGAGCCTTAGAAAGGAACGTTTTGGATGCGACGGACCCTAGAGTTATTAACATCACAGACGGGCATTCTATTCTTACTGAATTGCACTGCAATTCAGAAACGAGCTTCTTGATATTTCTGGACGATTTTGAAAACAACACCGTGAAATTTCGCCTGGAAGAGGAATTGAAAAAGATCGGTTTCAAATCAGATCTTGATGTCACTATCCAGAATAAAGAAACAGTAGACAAGCAAGTCAGTCACATGAGGGGCAAGTGTTCTACCGGAAAAGAAACTGGAAAAGCAGTTATATGGCAAGGAAATCACAAGGACCTTGCTAAGCATGAGGAGGAAAAGCTGAATAAACCTGAGGACAAATTTTCCAAAGAATTGCAACGGATCGAGAATGAATTAGACAAAATATGTTTCGAGAAAGCTAAAGAAAACTCAACCCGCGAACTAGAATGTATAAAGGAAAGGCTACAAAGAGAACTCGCGATATCAAAAGGTCTACGCAAAACGACTGAAAAGCTCCAAGAAGAGAAAAAGAGACTGGAAACCACTCGCAGAAGCATGGAACACGATGTTTTGGAACTTCGTGAAAAGGTGCATGAACTTGAGAAGACAAACCAATCCTTCCAGCAAAAACTAAAAAGAACGGAAAAGGAAATAGAACGCTTACAGCTCAAGGAAATAGATGACGTCATACCTGAAACTCGACCAAGATCCCCCTCAGGGACATCATTAGGTGCAAGTTCTGGTTACCAGTCGGAGGAAGAACCTGATGAATCAACCTTAGAGATCATTCAGATGCCAAGGTCCCAGGTCATACAAGAAGGAAAGAAGTTGGTGTTAAGTTGTCACACCCGGGGATTATCAGATATGCGGTATCGGTGGGTTAAAGATGATGTTGAAATCCCTGGGGCTAATCGTCCTGACTTGGTATTAGAACCAGTGCGAACGCATGATTTTGGGATGTATTTTTGCCATGTGTGGGACAAGAGTGGTTCAGTTACCTCACTTGCTGCCGACATTGACGTGTTTCCACGGGCTAACAAAAGGTTTAAAGGCTTACACGAACTCAACGAAGAGACAAAGCAAGCCTTCATTGATCTACTTAGCAAGAAAAGACTCCCTGGGCTTGCAACATGGAAGCAAGTGGCTCGGAGATACGGGATGAGAGAAACAGAAATATCTCTTTTAGACATGGAGAAAGTTCCCGCTGCTGCCCTGTTTCAAAAGCTTTTATCATTGGGGTCTAATCTAACGGTCTATTACCTCTGCAAAACGTTCAAAGAAGCTAATCTCAAACGTTTGGATTGCGTTGATCTTCTTTCACAGGAAATGGTGACATCCATTTAG

Transcript

agem_s0555.g2.t1

CACGGAAAAAAAATTGCTTCCCAGGGAGGCAACAATGCAACCTTGATTTTCCGAAAGGCAAAAAAACTAAAGGTATTAAAATTTTTTGCCATGCATATGGAATTTTGTTAGGTGCAAGTTCTGGTTACCAGTCGGAGGAAGAACCTGATGAATCAACCTTGGAGATCATTCAGATGCCAAGGTCCCAGGTCATACAAGAAGGAAAGAAGTTGGTGTTAAGTTGTCACACCCGGGGATTATCAGATATGCGGTATCGGTGGGTTAAAGATGATGTTGAAATCCCTGGGGCTAATCGTCCTGACTTGGTATTAGAACCAGTGCGAACGCATGATTTTGGGATGTATTTTTGCCATGTGTGGGACAAGAGTGGTTCAGTTACCTCACTTGCTGCCGACATTGACGTGTTTCCACGGACTAACAAAAGGTTTAAAGGCTTACACGAACTCAACGAAGAGACAAAGCAAGCCTTCATTGATCTACTTAGCAAGAAAAGAATCCCTGGGCTTGCAACATGGAAGCAAGTGGCTCGGAGATACGGGATGAGAGAAACAGAAATATCTCTTTTAGACAAAGAGAAAGTTCCCGCTGCTGCCCTGTTTCAAAAACTTTTATCACTGGGGCCTAATCTAACGGTCTATTATCTCTGCAAAACGTTCAAAGAAGCTGGTCTCAAACAAGACGTCGCAAAAGCAGCAGCTGAAGCCAGCACAAATGCAGTCTTGGATTTGTCACTTTGTACAGGCGCATTTTCCATATCTCTCAAGATCGACAATGTGTGGCTAGCAGGGGCTGTGACCTTGGGTGCATTGTCGTTAGGGGCTTTTTATTTGTCTTGCAAGGGGCCCACAGAGGAAGCTATAAGAAGAGCCTTAGAAAGGAACGTTTTGGATGCGACGGACCCTAGAGTTATTAACATCACAGACGGGCATTCTATTCTTACTGAATTGCACTGCAATTCAGAAACGAGCTTCTTGATATTTCTGGACGATTTTGAAAACAACACCGTGAAATTTCGCCTGGAAGAGGAATTGAAAAAGATCGGTTTCAAATCAGATCTTGATGTCACTATCCAGAATAAAGAAACAGTAGACAAGCAAGTCAGTCACATGAGGGGCAAGTGTTCTACCGGAAAAGAAACTGGAAAAGCAGTTATATGGCAAGGAAATCACAAGGACCTTGCTAAGCATGAGGAGGAAAAGCTGAATAAACCTGAGGACAAATTTTCCAAAGAATTGCAACGGATCGAGAATGAATTAGACAAAATATGTTTCGAGAAAGCTAAAGAAAACTCAACCCGCGAACTAGAATGTATAAAGGAAAGGCTACAAAGAGAACTCGCGATATCAAAAGGTCTACGCAAAACGACTGAAAAGCTCCAAGAAGAGAAAAAGAGACTGGAAACCACTCGCAGAAGCATGGAACACGATGTTTTGGAACTTCGTGAAAAGGTGCATGAACTTGAGAAGACAAACCAATCCTTCCAGCAAAAACTAAAAAGAACGGAAAAGGAAATAGAACGCTTACAGCTCAAGGAAATAGATGACGTCATACCTGAAACTCGACCAAGATCCCCCTCAGGGACATCATTAGGTGCAAGTTCTGGTTACCAGTCGGAGGAAGAACCTGATGAATCAACCTTAGAGATCATTCAGATGCCAAGGTCCCAGGTCATACAAGAAGGAAAGAAGTTGGTGTTAAGTTGTCACACCCGGGGATTATCAGATATGCGGTATCGGTGGGTTAAAGATGATGTTGAAATCCCTGGGGCTAATCGTCCTGACTTGGTATTAGAACCAGTGCGAACGCATGATTTTGGGATGTATTTTTGCCATGTGTGGGACAAGAGTGGTTCAGTTACCTCACTTGCTGCCGACATTGACGTGTTTCCACGGGCTAACAAAAGGTTTAAAGGCTTACACGAACTCAACGAAGAGACAAAGCAAGCCTTCATTGATCTACTTAGCAAGAAAAGACTCCCTGGGCTTGCAACATGGAAGCAAGTGGCTCGGAGATACGGGATGAGAGAAACAGAAATATCTCTTTTAGACATGGAGAAAGTTCCCGCTGCTGCCCTGTTTCAAAAGCTTTTATCATTGGGGTCTAATCTAACGGTCTATTACCTCTGCAAAACGTTCAAAGAAGCTAATCTCAAACGTTTGGATTGCGTTGATCTTCTTTCACAGGAAATGGTGACATCCATTTAGTAGAATTCTTACATGATTGGGAAACACACCAAAATAGTTTTAGAACATCCTCATCCAGATCTACTTGTTTAATACTTACAAAAAGAAAAAGAGTTTTTTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47243	SIALOADHESIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0046790	Molecular Function	virion binding	Interproscan
GO:0075512	Biological Process	clathrin-dependent endocytosis of virus by host cell	Interproscan